Gynoside A

Details

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Internal ID bbc90ab5-5798-44ba-a359-2b3a2a487094
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name (2S,3R,4S,5S,6R)-2-[(2S,3R,4S,5R)-4,5-dihydroxy-2-[[(3S,5R,8R,9R,10R,12R,13R,14R,17S)-12-hydroxy-17-[(2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4,4,8,10,14-pentamethyl-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
SMILES (Canonical) CC1(C2CCC3(C(C2(CCC1OC4C(C(C(CO4)O)O)OC5C(C(C(C(O5)CO)O)O)O)C)CC(C6C3(CCC6C7(CCC(O7)C(C)(C)O)C)C)O)C)C
SMILES (Isomeric) C[C@]1(CC[C@H](O1)C(C)(C)O)[C@H]2CC[C@@]3([C@@H]2[C@@H](C[C@H]4[C@]3(CC[C@@H]5[C@@]4(CC[C@@H](C5(C)C)O[C@H]6[C@@H]([C@H]([C@@H](CO6)O)O)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O)C)C)O)C
InChI InChI=1S/C41H70O13/c1-36(2)24-10-15-39(6)25(17-21(43)28-20(9-14-40(28,39)7)41(8)16-12-27(54-41)37(3,4)49)38(24,5)13-11-26(36)52-35-33(29(45)22(44)19-50-35)53-34-32(48)31(47)30(46)23(18-42)51-34/h20-35,42-49H,9-19H2,1-8H3/t20-,21+,22+,23+,24-,25+,26-,27-,28-,29-,30+,31-,32+,33+,34-,35-,38-,39+,40+,41-/m0/s1
InChI Key QAKYPUDKYKSDPU-PVMVRJIDSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C41H70O13
Molecular Weight 771.00 g/mol
Exact Mass 770.48164228 g/mol
Topological Polar Surface Area (TPSA) 208.00 Ų
XlogP 2.80
Atomic LogP (AlogP) 2.00
H-Bond Acceptor 13
H-Bond Donor 8
Rotatable Bonds 7

Synonyms

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(2S,3R,4S,5S,6R)-2-[(2S,3R,4S,5R)-4,5-Dihydroxy-2-[[(3S,5R,8R,9R,10R,12R,13R,14R,17S)-12-hydroxy-17-[(2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4,4,8,10,14-pentamethyl-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol

2D Structure

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2D Structure of Gynoside A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6445 64.45%
Caco-2 - 0.8803 88.03%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.7384 73.84%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8246 82.46%
OATP1B3 inhibitior + 0.9365 93.65%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6000 60.00%
BSEP inhibitior - 0.8454 84.54%
P-glycoprotein inhibitior + 0.7629 76.29%
P-glycoprotein substrate - 0.6512 65.12%
CYP3A4 substrate + 0.7488 74.88%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8413 84.13%
CYP3A4 inhibition - 0.9134 91.34%
CYP2C9 inhibition - 0.8836 88.36%
CYP2C19 inhibition - 0.8938 89.38%
CYP2D6 inhibition - 0.9488 94.88%
CYP1A2 inhibition - 0.9271 92.71%
CYP2C8 inhibition + 0.6968 69.68%
CYP inhibitory promiscuity - 0.9430 94.30%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6251 62.51%
Eye corrosion - 0.9900 99.00%
Eye irritation - 0.9099 90.99%
Skin irritation - 0.7136 71.36%
Skin corrosion - 0.9502 95.02%
Ames mutagenesis - 0.6570 65.70%
Human Ether-a-go-go-Related Gene inhibition + 0.7596 75.96%
Micronuclear - 0.8700 87.00%
Hepatotoxicity - 0.7579 75.79%
skin sensitisation - 0.9311 93.11%
Respiratory toxicity + 0.6333 63.33%
Reproductive toxicity + 0.7000 70.00%
Mitochondrial toxicity - 0.5875 58.75%
Nephrotoxicity - 0.9174 91.74%
Acute Oral Toxicity (c) I 0.7469 74.69%
Estrogen receptor binding + 0.6791 67.91%
Androgen receptor binding + 0.7334 73.34%
Thyroid receptor binding - 0.5987 59.87%
Glucocorticoid receptor binding + 0.6401 64.01%
Aromatase binding + 0.6763 67.63%
PPAR gamma + 0.7073 70.73%
Honey bee toxicity - 0.5808 58.08%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.5000 50.00%
Fish aquatic toxicity + 0.8453 84.53%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 98.26% 97.25%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.21% 96.09%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 95.18% 95.58%
CHEMBL218 P21554 Cannabinoid CB1 receptor 94.31% 96.61%
CHEMBL5888 Q99558 Mitogen-activated protein kinase kinase kinase 14 94.27% 100.00%
CHEMBL4302 P08183 P-glycoprotein 1 94.01% 92.98%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 93.52% 96.21%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.05% 97.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.11% 91.11%
CHEMBL226 P30542 Adenosine A1 receptor 90.79% 95.93%
CHEMBL2996 Q05655 Protein kinase C delta 90.59% 97.79%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 90.22% 96.77%
CHEMBL4681 P42330 Aldo-keto-reductase family 1 member C3 89.95% 89.05%
CHEMBL1871 P10275 Androgen Receptor 88.44% 96.43%
CHEMBL1293249 Q13887 Kruppel-like factor 5 88.30% 86.33%
CHEMBL1994 P08235 Mineralocorticoid receptor 88.24% 100.00%
CHEMBL241 Q14432 Phosphodiesterase 3A 87.78% 92.94%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.57% 95.89%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 86.46% 95.50%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 85.41% 92.88%
CHEMBL259 P32245 Melanocortin receptor 4 85.07% 95.38%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 83.92% 97.14%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.73% 94.00%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 83.54% 97.33%
CHEMBL2534 O15530 3-phosphoinositide dependent protein kinase-1 82.82% 95.36%
CHEMBL3714130 P46095 G-protein coupled receptor 6 82.79% 97.36%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 82.58% 92.86%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 82.51% 92.62%
CHEMBL5028 O14672 ADAM10 81.45% 97.50%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 81.43% 82.69%
CHEMBL3922 P50579 Methionine aminopeptidase 2 81.19% 97.28%
CHEMBL4618 P09960 Leukotriene A4 hydrolase 80.71% 97.86%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 80.16% 96.90%
CHEMBL1806 P11388 DNA topoisomerase II alpha 80.04% 89.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 80.03% 94.45%
CHEMBL237 P41145 Kappa opioid receptor 80.00% 98.10%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Coleostephus myconis
Dahlia pinnata
Gynostemma pentaphyllum
Synotis alata

Cross-Links

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PubChem 21580242
NPASS NPC169561
LOTUS LTS0106332
wikiData Q105217491