Gracilin D

Details

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Internal ID a3eb0279-9e9b-484a-8c64-b9f59aef58f2
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Tricarboxylic acids and derivatives
IUPAC Name [(1S,2R,3R,4S,6S,8R,11Z)-4-acetyloxy-11-[(2E)-2-(3,3-dimethylcyclohexylidene)ethylidene]-10-oxo-5,7,9-trioxatricyclo[6.3.0.02,6]undecan-3-yl] propanoate
SMILES (Canonical) CCC(=O)OC1C2C3C(OC2OC1OC(=O)C)OC(=O)C3=CC=C4CCCC(C4)(C)C
SMILES (Isomeric) CCC(=O)O[C@@H]1[C@H]2[C@@H]\3[C@H](O[C@H]2O[C@H]1OC(=O)C)OC(=O)/C3=C\C=C\4/CCCC(C4)(C)C
InChI InChI=1S/C23H30O8/c1-5-15(25)28-18-17-16-14(9-8-13-7-6-10-23(3,4)11-13)19(26)29-20(16)30-21(17)31-22(18)27-12(2)24/h8-9,16-18,20-22H,5-7,10-11H2,1-4H3/b13-8+,14-9-/t16-,17-,18-,20+,21+,22-/m1/s1
InChI Key JCWZFOPWRPXHOD-GTXMBTSLSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C23H30O8
Molecular Weight 434.50 g/mol
Exact Mass 434.19406791 g/mol
Topological Polar Surface Area (TPSA) 97.40 Ų
XlogP 3.60
Atomic LogP (AlogP) 3.15
H-Bond Acceptor 8
H-Bond Donor 0
Rotatable Bonds 4

Synonyms

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106849-36-9
Difuro(2,3-b:3',2'-d)furan-2(3H)-one, 5-(acetyloxy)-3-((3,3-dimethylcyclohexylidene)ethylidene)hexahydro-4-(1-oxopropoxy)-, (3aS-(3Z(E),3aalpha,3balpha,4alpha,5beta,6aalpha,7aalpha))-

2D Structure

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2D Structure of Gracilin D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9934 99.34%
Caco-2 - 0.5641 56.41%
Blood Brain Barrier + 0.9250 92.50%
Human oral bioavailability - 0.7571 75.71%
Subcellular localzation Mitochondria 0.7526 75.26%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8058 80.58%
OATP1B3 inhibitior + 0.8207 82.07%
MATE1 inhibitior - 0.7400 74.00%
OCT2 inhibitior - 0.5750 57.50%
BSEP inhibitior - 0.6408 64.08%
P-glycoprotein inhibitior + 0.7728 77.28%
P-glycoprotein substrate - 0.6415 64.15%
CYP3A4 substrate + 0.6569 65.69%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8978 89.78%
CYP3A4 inhibition + 0.5262 52.62%
CYP2C9 inhibition - 0.7762 77.62%
CYP2C19 inhibition - 0.7124 71.24%
CYP2D6 inhibition - 0.9316 93.16%
CYP1A2 inhibition - 0.7329 73.29%
CYP2C8 inhibition + 0.4826 48.26%
CYP inhibitory promiscuity - 0.7522 75.22%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9100 91.00%
Carcinogenicity (trinary) Non-required 0.5247 52.47%
Eye corrosion - 0.9843 98.43%
Eye irritation - 0.9221 92.21%
Skin irritation - 0.5254 52.54%
Skin corrosion - 0.8959 89.59%
Ames mutagenesis - 0.6120 61.20%
Human Ether-a-go-go-Related Gene inhibition + 0.6877 68.77%
Micronuclear - 0.7500 75.00%
Hepatotoxicity - 0.5823 58.23%
skin sensitisation - 0.7663 76.63%
Respiratory toxicity + 0.7889 78.89%
Reproductive toxicity + 0.6556 65.56%
Mitochondrial toxicity + 0.7125 71.25%
Nephrotoxicity - 0.6349 63.49%
Acute Oral Toxicity (c) III 0.5462 54.62%
Estrogen receptor binding + 0.6473 64.73%
Androgen receptor binding + 0.5665 56.65%
Thyroid receptor binding + 0.5655 56.55%
Glucocorticoid receptor binding + 0.6148 61.48%
Aromatase binding - 0.5000 50.00%
PPAR gamma + 0.6134 61.34%
Honey bee toxicity - 0.7726 77.26%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.6600 66.00%
Fish aquatic toxicity + 0.9950 99.50%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.15% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.89% 96.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 96.40% 94.45%
CHEMBL253 P34972 Cannabinoid CB2 receptor 92.39% 97.25%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.34% 89.00%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 88.29% 96.95%
CHEMBL2581 P07339 Cathepsin D 87.89% 98.95%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 87.55% 92.62%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 87.35% 95.50%
CHEMBL2413 P32246 C-C chemokine receptor type 1 87.33% 89.50%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.94% 95.56%
CHEMBL340 P08684 Cytochrome P450 3A4 85.84% 91.19%
CHEMBL4051 P13569 Cystic fibrosis transmembrane conductance regulator 84.87% 95.71%
CHEMBL1994 P08235 Mineralocorticoid receptor 84.13% 100.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.96% 95.89%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 82.92% 99.23%
CHEMBL5255 O00206 Toll-like receptor 4 82.39% 92.50%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.73% 86.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 80.26% 97.09%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 6442952
LOTUS LTS0097436
wikiData Q105125235