Gentirigeoside C

Details

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Internal ID 17a8f086-df28-4b95-83d9-80baa783837e
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name (2S,4S,5S)-4,5-dihydroxy-6,6-dimethyl-2-[(3S,4S,5R,8R,9R,10R,13R,14R,17S)-4,8,10,14-tetramethyl-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-4-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]oxane-2-carboxylic acid
SMILES (Canonical) CC1(C(C(CC(O1)(C2CCC3(C2CCC4C3(CCC5C4(CCC(C5(C)COC6C(C(C(C(O6)CO)O)O)O)OC7C(C(C(C(O7)CO)O)O)O)C)C)C)C(=O)O)O)O)C
SMILES (Isomeric) C[C@@]12CC[C@@H]([C@H]1CC[C@H]3[C@]2(CC[C@@H]4[C@@]3(CC[C@@H]([C@]4(C)CO[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)C)C)[C@@]7(C[C@@H]([C@@H](C(O7)(C)C)O)O)C(=O)O
InChI InChI=1S/C42H70O17/c1-37(2)33(52)21(45)15-42(59-37,36(53)54)20-9-13-40(5)19(20)7-8-25-38(3)12-11-26(58-35-32(51)30(49)28(47)23(17-44)57-35)39(4,24(38)10-14-41(25,40)6)18-55-34-31(50)29(48)27(46)22(16-43)56-34/h19-35,43-52H,7-18H2,1-6H3,(H,53,54)/t19-,20+,21+,22-,23-,24-,25-,26+,27-,28-,29+,30+,31-,32-,33+,34-,35+,38+,39-,40-,41-,42+/m1/s1
InChI Key AQYVSJSIOILIQJ-CUWSSRGUSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C42H70O17
Molecular Weight 847.00 g/mol
Exact Mass 846.46130076 g/mol
Topological Polar Surface Area (TPSA) 286.00 Ų
XlogP 1.10
Atomic LogP (AlogP) -0.60
H-Bond Acceptor 16
H-Bond Donor 11
Rotatable Bonds 9

Synonyms

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CHEMBL373539

2D Structure

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2D Structure of Gentirigeoside C

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6739 67.39%
Caco-2 - 0.8764 87.64%
Blood Brain Barrier - 0.6750 67.50%
Human oral bioavailability - 0.7714 77.14%
Subcellular localzation Mitochondria 0.7997 79.97%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8348 83.48%
OATP1B3 inhibitior + 0.8901 89.01%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.7287 72.87%
BSEP inhibitior - 0.4823 48.23%
P-glycoprotein inhibitior + 0.7489 74.89%
P-glycoprotein substrate - 0.6609 66.09%
CYP3A4 substrate + 0.7315 73.15%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8809 88.09%
CYP3A4 inhibition - 0.9186 91.86%
CYP2C9 inhibition - 0.8887 88.87%
CYP2C19 inhibition - 0.9086 90.86%
CYP2D6 inhibition - 0.9588 95.88%
CYP1A2 inhibition - 0.9272 92.72%
CYP2C8 inhibition + 0.6254 62.54%
CYP inhibitory promiscuity - 0.9674 96.74%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.6885 68.85%
Eye corrosion - 0.9912 99.12%
Eye irritation - 0.9074 90.74%
Skin irritation - 0.6974 69.74%
Skin corrosion - 0.9528 95.28%
Ames mutagenesis - 0.6270 62.70%
Human Ether-a-go-go-Related Gene inhibition + 0.7150 71.50%
Micronuclear - 0.8700 87.00%
Hepatotoxicity - 0.7947 79.47%
skin sensitisation - 0.9346 93.46%
Respiratory toxicity + 0.7111 71.11%
Reproductive toxicity + 0.7667 76.67%
Mitochondrial toxicity - 0.5625 56.25%
Nephrotoxicity - 0.5750 57.50%
Acute Oral Toxicity (c) I 0.6197 61.97%
Estrogen receptor binding + 0.7147 71.47%
Androgen receptor binding + 0.7538 75.38%
Thyroid receptor binding - 0.5599 55.99%
Glucocorticoid receptor binding + 0.5703 57.03%
Aromatase binding + 0.6463 64.63%
PPAR gamma + 0.7171 71.71%
Honey bee toxicity - 0.7657 76.57%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.6105 61.05%
Fish aquatic toxicity + 0.8680 86.80%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.45% 96.09%
CHEMBL218 P21554 Cannabinoid CB1 receptor 93.78% 96.61%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 90.23% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 88.88% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.98% 97.09%
CHEMBL5255 O00206 Toll-like receptor 4 86.04% 92.50%
CHEMBL5608 Q16288 NT-3 growth factor receptor 85.48% 95.89%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 84.89% 95.56%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 83.82% 95.50%
CHEMBL5028 O14672 ADAM10 83.54% 97.50%
CHEMBL1994 P08235 Mineralocorticoid receptor 83.18% 100.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 82.66% 89.00%
CHEMBL4227 P25090 Lipoxin A4 receptor 82.36% 100.00%
CHEMBL1966 Q02127 Dihydroorotate dehydrogenase 81.93% 96.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.22% 86.33%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 80.48% 93.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.34% 99.17%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Gentiana crassa subsp. rigescens

Cross-Links

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PubChem 44422966
NPASS NPC228190
LOTUS LTS0034338
wikiData Q104917177