Gentiournoside D

Details

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Internal ID f490ff1e-11ef-4c62-86cb-958a68e7c49c
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Iridoid O-glycosides
IUPAC Name (1S,4aS,6S,7R,7aS)-6-(2,3-dihydroxybenzoyl)oxy-7-methyl-1-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C23H28O13/c1-8-13(34-21(32)9-3-2-4-12(25)16(9)26)5-10-11(20(30)31)7-33-22(15(8)10)36-23-19(29)18(28)17(27)14(6-24)35-23/h2-4,7-8,10,13-15,17-19,22-29H,5-6H2,1H3,(H,30,31)/t8-,10+,13-,14+,15+,17+,18-,19+,22-,23-/m0/s1
InChI Key CAKNXIQZWKLNKL-AOLCZBGXSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C23H28O13
Molecular Weight 512.50 g/mol
Exact Mass 512.15299094 g/mol
Topological Polar Surface Area (TPSA) 213.00 Ų
XlogP 0.40
Atomic LogP (AlogP) -0.96
H-Bond Acceptor 12
H-Bond Donor 7
Rotatable Bonds 6

Synonyms

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157722-21-9
GentiournosideD
(1S,4aS,6S,7R,7aS)-6-(2,3-dihydroxybenzoyl)oxy-7-methyl-1-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylic acid
(1S,4aS,6S,7R,7aS)-6-((2,3-Dihydroxybenzoyl)oxy)-7-methyl-1-(((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylic acid
HY-N5065
FS-7188
DA-63739
CS-0032259
E88860

2D Structure

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2D Structure of Gentiournoside D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7793 77.93%
Caco-2 - 0.9079 90.79%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.8286 82.86%
Subcellular localzation Mitochondria 0.6530 65.30%
OATP2B1 inhibitior - 0.8526 85.26%
OATP1B1 inhibitior - 0.4195 41.95%
OATP1B3 inhibitior + 0.9589 95.89%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior - 0.5899 58.99%
P-glycoprotein inhibitior - 0.7281 72.81%
P-glycoprotein substrate - 0.6156 61.56%
CYP3A4 substrate + 0.6462 64.62%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8783 87.83%
CYP3A4 inhibition - 0.9100 91.00%
CYP2C9 inhibition - 0.7124 71.24%
CYP2C19 inhibition - 0.7441 74.41%
CYP2D6 inhibition - 0.8975 89.75%
CYP1A2 inhibition - 0.6712 67.12%
CYP2C8 inhibition + 0.6361 63.61%
CYP inhibitory promiscuity - 0.6140 61.40%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.7032 70.32%
Eye corrosion - 0.9908 99.08%
Eye irritation - 0.9459 94.59%
Skin irritation - 0.7522 75.22%
Skin corrosion - 0.9400 94.00%
Ames mutagenesis - 0.5523 55.23%
Human Ether-a-go-go-Related Gene inhibition - 0.3753 37.53%
Micronuclear - 0.6000 60.00%
Hepatotoxicity - 0.7250 72.50%
skin sensitisation - 0.8149 81.49%
Respiratory toxicity + 0.6667 66.67%
Reproductive toxicity + 0.8667 86.67%
Mitochondrial toxicity + 0.7000 70.00%
Nephrotoxicity - 0.7950 79.50%
Acute Oral Toxicity (c) III 0.4729 47.29%
Estrogen receptor binding + 0.8065 80.65%
Androgen receptor binding + 0.5633 56.33%
Thyroid receptor binding - 0.5000 50.00%
Glucocorticoid receptor binding + 0.6188 61.88%
Aromatase binding - 0.5413 54.13%
PPAR gamma + 0.6585 65.85%
Honey bee toxicity - 0.8516 85.16%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.7900 79.00%
Fish aquatic toxicity + 0.9553 95.53%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.98% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.84% 96.09%
CHEMBL2581 P07339 Cathepsin D 95.81% 98.95%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.41% 97.09%
CHEMBL3401 O75469 Pregnane X receptor 89.78% 94.73%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.03% 86.33%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.79% 95.56%
CHEMBL2996 Q05655 Protein kinase C delta 85.73% 97.79%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 85.29% 99.23%
CHEMBL3359 P21462 Formyl peptide receptor 1 81.42% 93.56%
CHEMBL5028 O14672 ADAM10 80.27% 97.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Gentiana urnula

Cross-Links

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PubChem 134715243
LOTUS LTS0218886
wikiData Q104951448