GDP-fucose

Details

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Internal ID 7ea88e3e-b55e-4700-95d7-3abf301c9298
Taxonomy Nucleosides, nucleotides, and analogues > Purine nucleotides > Purine nucleotide sugars
IUPAC Name [[5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] (3,4,5-trihydroxy-6-methyloxan-2-yl) hydrogen phosphate
SMILES (Canonical) CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=NC4=C3N=C(NC4=O)N)O)O)O)O)O
SMILES (Isomeric) CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=NC4=C3N=C(NC4=O)N)O)O)O)O)O
InChI InChI=1S/C16H25N5O15P2/c1-4-7(22)9(24)11(26)15(33-4)35-38(30,31)36-37(28,29)32-2-5-8(23)10(25)14(34-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,7-11,14-15,22-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)
InChI Key LQEBEXMHBLQMDB-UHFFFAOYSA-N
Popularity 232 references in papers

Physical and Chemical Properties

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Molecular Formula C16H25N5O15P2
Molecular Weight 589.30 g/mol
Exact Mass 589.08223910 g/mol
Topological Polar Surface Area (TPSA) 307.00 Ų
XlogP -5.70
Atomic LogP (AlogP) -3.60
H-Bond Acceptor 17
H-Bond Donor 9
Rotatable Bonds 8

Synonyms

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Gdp fucose
GDP-L-fucose
Guanosine 5'-(trihydrogen pyrophosphate), mono(6-deoxy-D-allopyranosyl) ester
15839-70-0
16597-51-6
GDP-Fuc
GDP-6-deoxy-D-Tal
SCHEMBL24496886
LQEBEXMHBLQMDB-UHFFFAOYSA-N
MFCD00870977
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of GDP-fucose

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6921 69.21%
Caco-2 - 0.8884 88.84%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Mitochondria 0.3857 38.57%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9085 90.85%
OATP1B3 inhibitior + 0.9435 94.35%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.5474 54.74%
P-glycoprotein inhibitior - 0.4555 45.55%
P-glycoprotein substrate + 0.5000 50.00%
CYP3A4 substrate + 0.6193 61.93%
CYP2C9 substrate - 0.7918 79.18%
CYP2D6 substrate - 0.8700 87.00%
CYP3A4 inhibition - 0.8650 86.50%
CYP2C9 inhibition - 0.9007 90.07%
CYP2C19 inhibition - 0.9024 90.24%
CYP2D6 inhibition - 0.8608 86.08%
CYP1A2 inhibition - 0.8041 80.41%
CYP2C8 inhibition - 0.6525 65.25%
CYP inhibitory promiscuity - 0.9336 93.36%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.5029 50.29%
Eye corrosion - 0.9859 98.59%
Eye irritation - 0.9382 93.82%
Skin irritation - 0.7744 77.44%
Skin corrosion - 0.9273 92.73%
Ames mutagenesis - 0.6691 66.91%
Human Ether-a-go-go-Related Gene inhibition - 0.4619 46.19%
Micronuclear + 0.9900 99.00%
Hepatotoxicity - 0.6065 60.65%
skin sensitisation - 0.8451 84.51%
Respiratory toxicity + 0.8556 85.56%
Reproductive toxicity + 0.9333 93.33%
Mitochondrial toxicity + 0.9875 98.75%
Nephrotoxicity - 0.7348 73.48%
Acute Oral Toxicity (c) III 0.5337 53.37%
Estrogen receptor binding + 0.6805 68.05%
Androgen receptor binding + 0.6566 65.66%
Thyroid receptor binding + 0.5520 55.20%
Glucocorticoid receptor binding + 0.5476 54.76%
Aromatase binding + 0.7043 70.43%
PPAR gamma + 0.6661 66.61%
Honey bee toxicity - 0.7561 75.61%
Biodegradation - 0.6750 67.50%
Crustacea aquatic toxicity - 0.5600 56.00%
Fish aquatic toxicity + 0.7732 77.32%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.57% 96.09%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 96.54% 80.33%
CHEMBL3401 O75469 Pregnane X receptor 93.80% 94.73%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 93.35% 99.23%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.16% 94.00%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 89.96% 95.64%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.03% 86.33%
CHEMBL226 P30542 Adenosine A1 receptor 87.92% 95.93%
CHEMBL3714130 P46095 G-protein coupled receptor 6 87.87% 97.36%
CHEMBL2107 P61073 C-X-C chemokine receptor type 4 87.20% 93.10%
CHEMBL1806 P11388 DNA topoisomerase II alpha 86.07% 89.00%
CHEMBL4040 P28482 MAP kinase ERK2 85.78% 83.82%
CHEMBL2243 O00519 Anandamide amidohydrolase 85.72% 97.53%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 85.43% 91.11%
CHEMBL1952 P04818 Thymidylate synthase 84.65% 93.53%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 82.59% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 82.21% 97.09%
CHEMBL5957 P21589 5'-nucleotidase 81.38% 97.78%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Arabidopsis thaliana

Cross-Links

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PubChem 135402013
LOTUS LTS0011039
wikiData Q105155487