Gentamicin Impurity

Details

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Internal ID 080a2623-4f3d-49c9-b996-f2205d17b558
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Aminosaccharides > Aminoglycosides > Aminocyclitol glycosides
IUPAC Name 2-(4,6-diamino-2,3-dihydroxycyclohexyl)oxy-5-methyl-4-(methylamino)oxane-3,5-diol
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C13H27N3O6/c1-13(20)4-21-12(9(19)11(13)16-2)22-10-6(15)3-5(14)7(17)8(10)18/h5-12,16-20H,3-4,14-15H2,1-2H3
InChI Key ONKJLIUSEXIAKL-UHFFFAOYSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C13H27N3O6
Molecular Weight 321.37 g/mol
Exact Mass 321.18998559 g/mol
Topological Polar Surface Area (TPSA) 163.00 Ų
XlogP -4.30
Atomic LogP (AlogP) -3.79
H-Bond Acceptor 9
H-Bond Donor 7
Rotatable Bonds 3

Synonyms

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MCC0122
49751-51-1

2D Structure

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2D Structure of Gentamicin Impurity

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.9640 96.40%
Caco-2 - 0.8440 84.40%
Blood Brain Barrier - 1.0000 100.00%
Human oral bioavailability - 0.8714 87.14%
Subcellular localzation Lysosomes 0.6773 67.73%
OATP2B1 inhibitior - 0.8557 85.57%
OATP1B1 inhibitior + 0.9585 95.85%
OATP1B3 inhibitior + 0.9502 95.02%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior - 0.9561 95.61%
P-glycoprotein inhibitior - 0.9183 91.83%
P-glycoprotein substrate - 0.9054 90.54%
CYP3A4 substrate + 0.6003 60.03%
CYP2C9 substrate - 0.8000 80.00%
CYP2D6 substrate - 0.7242 72.42%
CYP3A4 inhibition - 0.9500 95.00%
CYP2C9 inhibition - 0.8955 89.55%
CYP2C19 inhibition - 0.8998 89.98%
CYP2D6 inhibition - 0.9266 92.66%
CYP1A2 inhibition - 0.8759 87.59%
CYP2C8 inhibition - 0.7014 70.14%
CYP inhibitory promiscuity - 0.8934 89.34%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.5916 59.16%
Eye corrosion - 0.9872 98.72%
Eye irritation - 0.9927 99.27%
Skin irritation - 0.8048 80.48%
Skin corrosion - 0.9102 91.02%
Ames mutagenesis - 0.5300 53.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5591 55.91%
Micronuclear + 0.7500 75.00%
Hepatotoxicity - 0.5630 56.30%
skin sensitisation - 0.8282 82.82%
Respiratory toxicity + 0.7444 74.44%
Reproductive toxicity + 0.8889 88.89%
Mitochondrial toxicity + 0.8875 88.75%
Nephrotoxicity + 0.5856 58.56%
Acute Oral Toxicity (c) III 0.6324 63.24%
Estrogen receptor binding - 0.5452 54.52%
Androgen receptor binding - 0.5706 57.06%
Thyroid receptor binding + 0.6440 64.40%
Glucocorticoid receptor binding + 0.6466 64.66%
Aromatase binding + 0.6113 61.13%
PPAR gamma + 0.6423 64.23%
Honey bee toxicity - 0.8027 80.27%
Biodegradation - 0.6250 62.50%
Crustacea aquatic toxicity - 0.5300 53.00%
Fish aquatic toxicity - 0.8973 89.73%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.49% 91.11%
CHEMBL3137262 O60341 LSD1/CoREST complex 95.19% 97.09%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.86% 96.09%
CHEMBL2996 Q05655 Protein kinase C delta 90.43% 97.79%
CHEMBL241 Q14432 Phosphodiesterase 3A 90.28% 92.94%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 89.39% 95.58%
CHEMBL226 P30542 Adenosine A1 receptor 88.50% 95.93%
CHEMBL5469 Q14289 Protein tyrosine kinase 2 beta 86.71% 91.03%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 86.62% 96.77%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 85.43% 94.45%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 85.28% 92.88%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.99% 95.89%
CHEMBL4630 O14757 Serine/threonine-protein kinase Chk1 83.62% 97.03%
CHEMBL3920 Q04759 Protein kinase C theta 82.55% 97.69%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 81.60% 91.07%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 81.53% 82.69%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 14699894
LOTUS LTS0174178
wikiData Q75059640