Epipodophyllotoxin

Details

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Internal ID 28f6787d-8fd2-4c2d-909c-fff84096cff4
Taxonomy Lignans, neolignans and related compounds > Lignan lactones > Podophyllotoxins
IUPAC Name (5S,5aR,8aR,9R)-5-hydroxy-9-(3,4,5-trimethoxyphenyl)-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one
SMILES (Canonical) COC1=CC(=CC(=C1OC)OC)C2C3C(COC3=O)C(C4=CC5=C(C=C24)OCO5)O
SMILES (Isomeric) COC1=CC(=CC(=C1OC)OC)[C@H]2[C@@H]3[C@H](COC3=O)[C@@H](C4=CC5=C(C=C24)OCO5)O
InChI InChI=1S/C22H22O8/c1-25-16-4-10(5-17(26-2)21(16)27-3)18-11-6-14-15(30-9-29-14)7-12(11)20(23)13-8-28-22(24)19(13)18/h4-7,13,18-20,23H,8-9H2,1-3H3/t13-,18+,19-,20+/m0/s1
InChI Key YJGVMLPVUAXIQN-LGWHJFRWSA-N
Popularity 2,430 references in papers

Physical and Chemical Properties

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Molecular Formula C22H22O8
Molecular Weight 414.40 g/mol
Exact Mass 414.13146766 g/mol
Topological Polar Surface Area (TPSA) 92.70 Ų
XlogP 2.00

Synonyms

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(-)-epipodophyllotoxin
4375-07-9
(5S,5aR,8aR,9R)-5-hydroxy-9-(3,4,5-trimethoxyphenyl)-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one
(5R)-5beta-(3,4,5-Trimethoxyphenyl)-7alpha-(hydroxymethyl)-8alpha-hydroxy-5,6,7,8-tetrahydronaphtho[2,3-d]-1,3-dioxole-6beta-carboxylic acid 6,7-lactone
BRN 0099162
CHEMBL282256
SCHEMBL5792464
DTXSID10859440
HY-N7654
Furo(3',4':6,7)naphtho(2,3-d)-1,3-dioxol-6(5aH)-one, 5,8,8a,9-tetrahydro-9-hydroxy-5-(3,4,5-trimethoxyphenyl)-, (5R,5aR,8aR,9S)-
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Epipodophyllotoxin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
No predicted properties yet!

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL4096 P04637 Cellular tumor antigen p53 15.8 nM
Potency
via Super-PRED
CHEMBL1806 P11388 DNA topoisomerase II alpha 486 nM
Kd
via Super-PRED
CHEMBL1293278 O75496 Geminin 35.5 nM
Potency
via Super-PRED
CHEMBL2034 P04150 Glucocorticoid receptor 14 nM
IC50
via Super-PRED
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 2 nM
15.8 nM
Potency
Potency
via Super-PRED
via Super-PRED
CHEMBL4040 P28482 MAP kinase ERK2 25.1 nM
79.4 nM
Potency
Potency
via Super-PRED
via Super-PRED
CHEMBL5162 Q6W5P4 Neuropeptide S receptor 125.9 nM
Potency
via Super-PRED
CHEMBL1293277 O15118 Niemann-Pick C1 protein 501.2 nM
Potency
via Super-PRED
CHEMBL1293235 P02545 Prelamin-A/C 3.2 nM
14.1 nM
89.1 nM
28.2 nM
Potency
Potency
Potency
Potency
via Super-PRED
via Super-PRED
via Super-PRED
via Super-PRED
CHEMBL1293294 P51151 Ras-related protein Rab-9A 112.2 nM
Potency
via Super-PRED
CHEMBL2842 P42345 Serine/threonine-protein kinase mTOR 14.7 nM
Potency
via Super-PRED
CHEMBL1293232 Q16637 Survival motor neuron protein 446.7 nM
Potency
via Super-PRED
CHEMBL1293256 P40225 Thrombopoietin 39.8 nM
Potency
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.19% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.73% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.64% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.92% 95.56%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 91.61% 96.77%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 90.60% 92.62%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.48% 86.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.72% 97.09%
CHEMBL2581 P07339 Cathepsin D 85.28% 98.95%
CHEMBL5311 P37023 Serine/threonine-protein kinase receptor R3 85.11% 82.67%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.84% 94.00%
CHEMBL4247 Q9UM73 ALK tyrosine kinase receptor 81.80% 96.86%
CHEMBL2535 P11166 Glucose transporter 81.69% 98.75%
CHEMBL1994 P08235 Mineralocorticoid receptor 81.57% 100.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.67% 99.17%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 80.41% 97.14%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Juniperus sabina
Podophyllum hexandrum
Podophyllum peltatum

Cross-Links

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PubChem 105111
LOTUS LTS0141056
wikiData Q3589174