Dynemicin A

Details

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Internal ID b96b6b1d-dc9b-44b1-9a1f-f59db23ec869
Taxonomy Benzenoids > Anthracenes > Anthraquinones
IUPAC Name (2R,4S,5S,8R,11Z,15S)-21,24,28-trihydroxy-7-methoxy-5-methyl-19,26-dioxo-3-oxa-16-azaheptacyclo[15.12.0.02,4.02,8.04,15.018,27.020,25]nonacosa-1(29),6,11,17,20,22,24,27-octaen-9,13-diyne-6-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C30H19NO9/c1-12-19(28(37)38)27(39-2)13-7-5-3-4-6-8-18-29(12)30(13,40-29)14-11-17(34)22-23(24(14)31-18)26(36)21-16(33)10-9-15(32)20(21)25(22)35/h3-4,9-13,18,31-34H,1-2H3,(H,37,38)/b4-3-/t12-,13+,18-,29-,30+/m0/s1
InChI Key AFMYMMXSQGUCBK-AKMKHHNQSA-N
Popularity 108 references in papers

Physical and Chemical Properties

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Molecular Formula C30H19NO9
Molecular Weight 537.50 g/mol
Exact Mass 537.10598118 g/mol
Topological Polar Surface Area (TPSA) 166.00 Ų
XlogP 3.30
Atomic LogP (AlogP) 2.16
H-Bond Acceptor 9
H-Bond Donor 5
Rotatable Bonds 2

Synonyms

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(2R,4S,5S,8R,11Z,15S)-21,24,28-trihydroxy-7-methoxy-5-methyl-19,26-dioxo-3-oxa-16-azaheptacyclo[15.12.0.02,4.02,8.04,15.018,27.020,25]nonacosa-1(29),6,11,17,20,22,24,27-octaen-9,13-diyne-6-carboxylic acid
7-methoxy-2-methylene-3-oxo-4H-1,4-benzoxazine-5-carboxylic acid
(2R,4S,5S,8R,11Z,15S)-21,24,28-trihydroxy-7-methoxy-5-methyl-19,26-dioxo-3-oxa-16-azaheptacyclo(15.12.0.02,4.02,8.04,15.018,27.020,25)nonacosa-1(29),6,11,17,20,22,24,27-octaen-9,13-diyne-6-carboxylic acid
RefChem:920727
4a,14a-Epoxy-4,14-(3)hexene(1,5)diynonaphtho(2,3-c)phenanthridine-2-carboxylic acid, 1,4,7,12,13,14-hexahydro-6,8,11-trihydroxy-3-methoxy-1-methyl-7,12-dioxo-, (1S,4R,4aR,14S,14aS,18Z)-
BU-3420T
D3G8N2863A
124412-57-3
SCHEMBL75156
CHEMBL2152479
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Dynemicin A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9386 93.86%
Caco-2 - 0.8430 84.30%
Blood Brain Barrier - 0.7250 72.50%
Human oral bioavailability + 0.5286 52.86%
Subcellular localzation Mitochondria 0.5494 54.94%
OATP2B1 inhibitior - 0.7050 70.50%
OATP1B1 inhibitior + 0.8540 85.40%
OATP1B3 inhibitior + 0.9383 93.83%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior + 0.8868 88.68%
P-glycoprotein inhibitior + 0.6241 62.41%
P-glycoprotein substrate - 0.5296 52.96%
CYP3A4 substrate + 0.6309 63.09%
CYP2C9 substrate - 0.6085 60.85%
CYP2D6 substrate - 0.8653 86.53%
CYP3A4 inhibition - 0.8050 80.50%
CYP2C9 inhibition - 0.6794 67.94%
CYP2C19 inhibition - 0.6074 60.74%
CYP2D6 inhibition - 0.8722 87.22%
CYP1A2 inhibition - 0.7207 72.07%
CYP2C8 inhibition + 0.5812 58.12%
CYP inhibitory promiscuity - 0.5415 54.15%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.8900 89.00%
Carcinogenicity (trinary) Danger 0.4473 44.73%
Eye corrosion - 0.9877 98.77%
Eye irritation - 0.9165 91.65%
Skin irritation - 0.8053 80.53%
Skin corrosion - 0.9352 93.52%
Ames mutagenesis + 0.5700 57.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4300 43.00%
Micronuclear + 0.8200 82.00%
Hepatotoxicity + 0.6125 61.25%
skin sensitisation - 0.8370 83.70%
Respiratory toxicity + 0.6222 62.22%
Reproductive toxicity + 0.7222 72.22%
Mitochondrial toxicity + 0.7250 72.50%
Nephrotoxicity + 0.6242 62.42%
Acute Oral Toxicity (c) III 0.5482 54.82%
Estrogen receptor binding + 0.8024 80.24%
Androgen receptor binding + 0.7829 78.29%
Thyroid receptor binding + 0.6057 60.57%
Glucocorticoid receptor binding + 0.7983 79.83%
Aromatase binding + 0.5734 57.34%
PPAR gamma + 0.7755 77.55%
Honey bee toxicity - 0.8082 80.82%
Biodegradation - 0.9750 97.50%
Crustacea aquatic toxicity - 0.6300 63.00%
Fish aquatic toxicity + 0.9540 95.40%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.96% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.12% 95.56%
CHEMBL1966 Q02127 Dihydroorotate dehydrogenase 91.55% 96.09%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.55% 96.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 90.92% 94.45%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 90.47% 99.15%
CHEMBL2581 P07339 Cathepsin D 89.54% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 88.82% 86.33%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 88.32% 90.71%
CHEMBL4208 P20618 Proteasome component C5 86.21% 90.00%
CHEMBL3194 P02766 Transthyretin 84.75% 90.71%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 82.96% 99.23%
CHEMBL3864 Q06124 Protein-tyrosine phosphatase 2C 82.28% 94.42%
CHEMBL340 P08684 Cytochrome P450 3A4 80.33% 91.19%
CHEMBL1806 P11388 DNA topoisomerase II alpha 80.20% 89.00%
CHEMBL3401 O75469 Pregnane X receptor 80.02% 94.73%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

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PubChem 10030135
LOTUS LTS0012657
wikiData Q5319198