dTDP-4-oxo-2,3,6-Trideoxy-D-glucose

Details

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Internal ID 7a5ea547-bb72-4960-b8db-3d4041a6ae83
Taxonomy Nucleosides, nucleotides, and analogues > Pyrimidine nucleotides > Pyrimidine nucleotide sugars
IUPAC Name [hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] [(2R,6R)-6-methyl-5-oxooxan-2-yl] hydrogen phosphate
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C16H24N2O13P2/c1-8-6-18(16(22)17-15(8)21)13-5-11(20)12(29-13)7-27-32(23,24)31-33(25,26)30-14-4-3-10(19)9(2)28-14/h6,9,11-14,20H,3-5,7H2,1-2H3,(H,23,24)(H,25,26)(H,17,21,22)/t9-,11+,12-,13-,14-/m1/s1
InChI Key YINKRXMSCURQIS-RHZHCTOVSA-N
Popularity 6 references in papers

Physical and Chemical Properties

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Molecular Formula C16H24N2O13P2
Molecular Weight 514.31 g/mol
Exact Mass 514.07536282 g/mol
Topological Polar Surface Area (TPSA) 207.00 Ų
XlogP -2.80
Atomic LogP (AlogP) -0.16
H-Bond Acceptor 12
H-Bond Donor 4
Rotatable Bonds 8

Synonyms

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dTDP-4-dehydro-2,3,6-trideoxy-alpha-D-glucose
dTDP-[(2R,6R)-tetrahydro-6-methyl-5-oxo-2H-pyran-2-yl] ester
CHEBI:81461
C18032
Q27155391
5'-O-{hydroxy[(hydroxy{[(2R,6R)-6-methyl-5-oxooxan-2-yl]oxy}phosphoryl)oxy]phosphoryl}thymidine

2D Structure

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2D Structure of dTDP-4-oxo-2,3,6-Trideoxy-D-glucose

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.5996 59.96%
Caco-2 - 0.8520 85.20%
Blood Brain Barrier - 0.5500 55.00%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Mitochondria 0.5744 57.44%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9109 91.09%
OATP1B3 inhibitior + 0.9266 92.66%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior - 0.7868 78.68%
P-glycoprotein inhibitior + 0.5759 57.59%
P-glycoprotein substrate - 0.6477 64.77%
CYP3A4 substrate + 0.6648 66.48%
CYP2C9 substrate - 0.7989 79.89%
CYP2D6 substrate - 0.8652 86.52%
CYP3A4 inhibition + 0.5827 58.27%
CYP2C9 inhibition - 0.7628 76.28%
CYP2C19 inhibition - 0.7468 74.68%
CYP2D6 inhibition - 0.8677 86.77%
CYP1A2 inhibition - 0.8399 83.99%
CYP2C8 inhibition - 0.6125 61.25%
CYP inhibitory promiscuity - 0.6419 64.19%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.8400 84.00%
Carcinogenicity (trinary) Non-required 0.5556 55.56%
Eye corrosion - 0.9831 98.31%
Eye irritation - 0.9560 95.60%
Skin irritation - 0.7971 79.71%
Skin corrosion - 0.9327 93.27%
Ames mutagenesis - 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3795 37.95%
Micronuclear + 0.9400 94.00%
Hepatotoxicity + 0.6434 64.34%
skin sensitisation - 0.8714 87.14%
Respiratory toxicity + 0.7889 78.89%
Reproductive toxicity + 0.9667 96.67%
Mitochondrial toxicity + 0.9250 92.50%
Nephrotoxicity - 0.5591 55.91%
Acute Oral Toxicity (c) III 0.5593 55.93%
Estrogen receptor binding + 0.7659 76.59%
Androgen receptor binding + 0.7595 75.95%
Thyroid receptor binding + 0.5893 58.93%
Glucocorticoid receptor binding + 0.5805 58.05%
Aromatase binding + 0.6687 66.87%
PPAR gamma + 0.6437 64.37%
Honey bee toxicity - 0.7490 74.90%
Biodegradation - 0.6000 60.00%
Crustacea aquatic toxicity - 0.5000 50.00%
Fish aquatic toxicity + 0.9361 93.61%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.62% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 94.44% 97.09%
CHEMBL3351 Q13085 Acetyl-CoA carboxylase 1 92.34% 93.04%
CHEMBL253 P34972 Cannabinoid CB2 receptor 92.14% 97.25%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 92.14% 80.33%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 90.73% 86.92%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 90.61% 85.14%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 90.24% 99.23%
CHEMBL2581 P07339 Cathepsin D 89.59% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.72% 95.56%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 88.29% 93.40%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 88.26% 91.71%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 87.93% 94.45%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 87.56% 100.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 87.04% 89.00%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 87.02% 94.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.23% 95.89%
CHEMBL5255 O00206 Toll-like receptor 4 84.21% 92.50%
CHEMBL3401 O75469 Pregnane X receptor 83.42% 94.73%
CHEMBL3230 O95977 Sphingosine 1-phosphate receptor Edg-6 83.01% 94.01%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 80.72% 93.03%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.17% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 46174038
LOTUS LTS0111831
wikiData Q27155391