Dibohemamine D

Details

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Internal ID 006df56c-7fc7-46ec-9bfe-23c5d43f5cf0
Taxonomy Organoheterocyclic compounds > Pyrrolizines
IUPAC Name N-[(5S,7R,8S)-2-[[(1S,2S,4R,5S)-1,5-dimethyl-7-(3-methylbut-2-enoylamino)-9-oxo-3-oxa-6-azatricyclo[4.3.0.02,4]non-7-en-8-yl]methyl]-7-hydroxy-5,8-dimethyl-1-oxo-6,7-dihydro-5H-pyrrolizin-3-yl]-3-methylbut-2-enamide
SMILES (Canonical) CC1CC(C2(N1C(=C(C2=O)CC3=C(N4C(C5C(C4(C3=O)C)O5)C)NC(=O)C=C(C)C)NC(=O)C=C(C)C)C)O
SMILES (Isomeric) C[C@H]1C[C@H]([C@@]2(N1C(=C(C2=O)CC3=C(N4[C@H]([C@@H]5[C@H]([C@]4(C3=O)C)O5)C)NC(=O)C=C(C)C)NC(=O)C=C(C)C)C)O
InChI InChI=1S/C29H38N4O6/c1-13(2)9-20(35)30-26-17(23(37)28(7)19(34)11-15(5)32(26)28)12-18-24(38)29(8)25-22(39-25)16(6)33(29)27(18)31-21(36)10-14(3)4/h9-10,15-16,19,22,25,34H,11-12H2,1-8H3,(H,30,35)(H,31,36)/t15-,16-,19+,22+,25+,28-,29+/m0/s1
InChI Key HMSVGXQESVZWBM-RZAFYMPVSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C29H38N4O6
Molecular Weight 538.60 g/mol
Exact Mass 538.27913494 g/mol
Topological Polar Surface Area (TPSA) 132.00 Ų
XlogP 2.50
Atomic LogP (AlogP) 1.57
H-Bond Acceptor 8
H-Bond Donor 3
Rotatable Bonds 6

Synonyms

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N-((5S,7R,8S)-2-(((1S,2S,4R,5S)-1,5-dimethyl-7-(3-methylbut-2-enoylamino)-9-oxo-3-oxa-6-azatricyclo(4.3.0.02,4)non-7-en-8-yl)methyl)-7-hydroxy-5,8-dimethyl-1-oxo-6,7-dihydro-5H-pyrrolizin-3-yl)-3-methylbut-2-enamide
N-[(5S,7R,8S)-2-[[(1S,2S,4R,5S)-1,5-dimethyl-7-(3-methylbut-2-enoylamino)-9-oxo-3-oxa-6-azatricyclo[4.3.0.02,4]non-7-en-8-yl]methyl]-7-hydroxy-5,8-dimethyl-1-oxo-6,7-dihydro-5H-pyrrolizin-3-yl]-3-methylbut-2-enamide
RefChem:132881
CHEMBL4168208
CHEBI:208463

2D Structure

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2D Structure of Dibohemamine D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9671 96.71%
Caco-2 - 0.7709 77.09%
Blood Brain Barrier - 0.7500 75.00%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Mitochondria 0.4327 43.27%
OATP2B1 inhibitior - 0.5690 56.90%
OATP1B1 inhibitior + 0.8687 86.87%
OATP1B3 inhibitior + 0.9373 93.73%
MATE1 inhibitior - 0.8200 82.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior + 0.8956 89.56%
P-glycoprotein inhibitior + 0.6924 69.24%
P-glycoprotein substrate + 0.5139 51.39%
CYP3A4 substrate + 0.6184 61.84%
CYP2C9 substrate - 0.6015 60.15%
CYP2D6 substrate - 0.8596 85.96%
CYP3A4 inhibition - 0.8785 87.85%
CYP2C9 inhibition - 0.7202 72.02%
CYP2C19 inhibition - 0.7412 74.12%
CYP2D6 inhibition - 0.9045 90.45%
CYP1A2 inhibition - 0.7759 77.59%
CYP2C8 inhibition - 0.7349 73.49%
CYP inhibitory promiscuity - 0.8138 81.38%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.4943 49.43%
Eye corrosion - 0.9830 98.30%
Eye irritation - 0.9235 92.35%
Skin irritation - 0.7529 75.29%
Skin corrosion - 0.9035 90.35%
Ames mutagenesis - 0.5700 57.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6874 68.74%
Micronuclear + 0.8700 87.00%
Hepatotoxicity + 0.5784 57.84%
skin sensitisation - 0.8274 82.74%
Respiratory toxicity + 0.6778 67.78%
Reproductive toxicity + 0.9000 90.00%
Mitochondrial toxicity + 0.9250 92.50%
Nephrotoxicity + 0.6908 69.08%
Acute Oral Toxicity (c) III 0.4799 47.99%
Estrogen receptor binding + 0.7889 78.89%
Androgen receptor binding + 0.7247 72.47%
Thyroid receptor binding + 0.6158 61.58%
Glucocorticoid receptor binding + 0.6844 68.44%
Aromatase binding + 0.6720 67.20%
PPAR gamma + 0.7155 71.55%
Honey bee toxicity - 0.8060 80.60%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity - 0.6000 60.00%
Fish aquatic toxicity + 0.6911 69.11%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.21% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.76% 96.09%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 92.23% 89.34%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 91.30% 85.14%
CHEMBL1806 P11388 DNA topoisomerase II alpha 87.10% 89.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.77% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.67% 95.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 86.14% 99.23%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.14% 86.33%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 85.98% 95.17%
CHEMBL340 P08684 Cytochrome P450 3A4 85.97% 91.19%
CHEMBL5028 O14672 ADAM10 84.42% 97.50%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 83.11% 94.33%
CHEMBL2413 P32246 C-C chemokine receptor type 1 82.89% 89.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 139589828
LOTUS LTS0035635
wikiData Q105030662