delphinidin 3-O-(6''-O-malonyl)-beta-D-glucoside

Details

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Internal ID 9951f4c2-1dd8-488b-8b0f-d60b1d31d7c4
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Anthocyanins > Anthocyanidin-3-O-glycosides
IUPAC Name 3-[[(2R,3S,4S,5R,6S)-6-[5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)chromenylium-3-yl]oxy-3,4,5-trihydroxyoxan-2-yl]methoxy]-3-oxopropanoic acid
SMILES (Canonical) C1=C(C=C(C(=C1O)O)O)C2=[O+]C3=CC(=CC(=C3C=C2OC4C(C(C(C(O4)COC(=O)CC(=O)O)O)O)O)O)O
SMILES (Isomeric) C1=C(C=C(C(=C1O)O)O)C2=[O+]C3=CC(=CC(=C3C=C2O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)COC(=O)CC(=O)O)O)O)O)O)O
InChI InChI=1S/C24H22O15/c25-9-3-11(26)10-5-15(23(37-14(10)4-9)8-1-12(27)19(32)13(28)2-8)38-24-22(35)21(34)20(33)16(39-24)7-36-18(31)6-17(29)30/h1-5,16,20-22,24,33-35H,6-7H2,(H5-,25,26,27,28,29,30,32)/p+1/t16-,20-,21+,22-,24-/m1/s1
InChI Key FNFHDAUGLIPVPU-XQKZCQIMSA-O
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C24H23O15+
Molecular Weight 551.40 g/mol
Exact Mass 551.10369502 g/mol
Topological Polar Surface Area (TPSA) 245.00 Ų
XlogP 0.00
Atomic LogP (AlogP) 0.11
H-Bond Acceptor 13
H-Bond Donor 9
Rotatable Bonds 7

Synonyms

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Delphinidin 3-(6''-malonyl-glucoside)
CHEBI:55334
Delphinidin 3-O-(6''-malonylglucoside)
Delphinidin 3-O-(6''-malonyl-glucoside)
Delphinidin 3-O-(6-O-malonyl-beta-D-glucoside)
Q27124240
3-[[(2R,3S,4S,5R,6S)-6-[5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)chromenylium-3-yl]oxy-3,4,5-trihydroxyoxan-2-yl]methoxy]-3-oxopropanoic acid
3-{[(2S,3R,4S,5S,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-1$l^{4}-chromen-1-ylium
5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium-3-yl 6-O-(carboxyacetyl)-beta-D-glucopyranoside

2D Structure

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2D Structure of delphinidin 3-O-(6''-O-malonyl)-beta-D-glucoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7373 73.73%
Caco-2 - 0.9156 91.56%
Blood Brain Barrier - 0.7250 72.50%
Human oral bioavailability - 0.7571 75.71%
Subcellular localzation Mitochondria 0.4755 47.55%
OATP2B1 inhibitior - 0.5535 55.35%
OATP1B1 inhibitior + 0.8677 86.77%
OATP1B3 inhibitior + 0.9196 91.96%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.7250 72.50%
BSEP inhibitior + 0.7195 71.95%
P-glycoprotein inhibitior + 0.5777 57.77%
P-glycoprotein substrate - 0.7129 71.29%
CYP3A4 substrate + 0.6125 61.25%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8540 85.40%
CYP3A4 inhibition - 0.9053 90.53%
CYP2C9 inhibition - 0.9342 93.42%
CYP2C19 inhibition - 0.9071 90.71%
CYP2D6 inhibition - 0.9249 92.49%
CYP1A2 inhibition - 0.9077 90.77%
CYP2C8 inhibition + 0.7889 78.89%
CYP inhibitory promiscuity - 0.9462 94.62%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6701 67.01%
Eye corrosion - 0.9914 99.14%
Eye irritation - 0.8806 88.06%
Skin irritation - 0.8147 81.47%
Skin corrosion - 0.9545 95.45%
Ames mutagenesis - 0.6254 62.54%
Human Ether-a-go-go-Related Gene inhibition - 0.3848 38.48%
Micronuclear + 0.7018 70.18%
Hepatotoxicity - 0.7625 76.25%
skin sensitisation - 0.9083 90.83%
Respiratory toxicity + 0.5889 58.89%
Reproductive toxicity + 0.8444 84.44%
Mitochondrial toxicity + 0.7000 70.00%
Nephrotoxicity - 0.9143 91.43%
Acute Oral Toxicity (c) III 0.4936 49.36%
Estrogen receptor binding + 0.8740 87.40%
Androgen receptor binding + 0.6255 62.55%
Thyroid receptor binding + 0.5175 51.75%
Glucocorticoid receptor binding + 0.5789 57.89%
Aromatase binding + 0.6166 61.66%
PPAR gamma + 0.7092 70.92%
Honey bee toxicity - 0.8314 83.14%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.6249 62.49%
Fish aquatic toxicity + 0.9495 94.95%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.50% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.28% 96.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 93.85% 99.17%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 93.31% 99.15%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.22% 89.00%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.24% 94.00%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 88.57% 95.64%
CHEMBL3194 P02766 Transthyretin 87.03% 90.71%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 86.70% 96.00%
CHEMBL2581 P07339 Cathepsin D 85.22% 98.95%
CHEMBL3714130 P46095 G-protein coupled receptor 6 83.07% 97.36%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 82.59% 94.33%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.09% 86.33%
CHEMBL3401 O75469 Pregnane X receptor 82.06% 94.73%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 81.46% 95.83%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 81.19% 95.50%
CHEMBL5255 O00206 Toll-like receptor 4 80.75% 92.50%
CHEMBL3475 P05121 Plasminogen activator inhibitor-1 80.72% 83.00%
CHEMBL3437 Q16853 Amine oxidase, copper containing 80.52% 94.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 80.07% 95.56%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Citrus × aurantium
Citrus trifoliata
Clitoria ternatea

Cross-Links

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PubChem 14311158
NPASS NPC50316
LOTUS LTS0062850
wikiData Q27124240