Dehydrocoformycin

Details

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Internal ID 4de91cbb-14ff-483e-aa02-0f9d60cdaeb3
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > Glycosylamines
IUPAC Name 3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4,7-dihydroimidazo[4,5-d][1,3]diazepin-8-one
SMILES (Canonical) C1C(=O)C2=C(NC=N1)N(C=N2)C3C(C(C(O3)CO)O)O
SMILES (Isomeric) C1C(=O)C2=C(NC=N1)N(C=N2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O
InChI InChI=1S/C11H14N4O5/c16-2-6-8(18)9(19)11(20-6)15-4-14-7-5(17)1-12-3-13-10(7)15/h3-4,6,8-9,11,16,18-19H,1-2H2,(H,12,13)/t6-,8-,9-,11-/m1/s1
InChI Key PICFAMQFTUCMDC-PNHWDRBUSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C11H14N4O5
Molecular Weight 282.25 g/mol
Exact Mass 282.09641956 g/mol
Topological Polar Surface Area (TPSA) 129.00 Ų
XlogP -1.10
Atomic LogP (AlogP) -1.87
H-Bond Acceptor 9
H-Bond Donor 4
Rotatable Bonds 2

Synonyms

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8-Oxocoformycin
3-(beta-D-ribofuranosyl)-6,7-dihydroimidazo[4,5-d][1,3]diazepin-8(3H)-one
C02243
SCHEMBL4408569
CHEBI:16299
PICFAMQFTUCMDC-PNHWDRBUSA-N
3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4,7-dihydroimidazo[4,5-d][1,3]diazepin-8-one
Q27101839
3-(beta-D-ribofuranosyl)-6,7-dihydroimidazo[4,5-d] [1,3]diazepin-8(3H)-one

2D Structure

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2D Structure of Dehydrocoformycin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7255 72.55%
Caco-2 - 0.8486 84.86%
Blood Brain Barrier + 0.8750 87.50%
Human oral bioavailability - 0.7714 77.14%
Subcellular localzation Nucleus 0.4868 48.68%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9131 91.31%
OATP1B3 inhibitior + 0.9433 94.33%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.8621 86.21%
P-glycoprotein inhibitior - 0.9241 92.41%
P-glycoprotein substrate - 0.8795 87.95%
CYP3A4 substrate - 0.5057 50.57%
CYP2C9 substrate - 0.8000 80.00%
CYP2D6 substrate - 0.8702 87.02%
CYP3A4 inhibition - 0.9551 95.51%
CYP2C9 inhibition - 0.9112 91.12%
CYP2C19 inhibition - 0.8961 89.61%
CYP2D6 inhibition - 0.9289 92.89%
CYP1A2 inhibition - 0.8116 81.16%
CYP2C8 inhibition - 0.9499 94.99%
CYP inhibitory promiscuity - 0.9451 94.51%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.8800 88.00%
Carcinogenicity (trinary) Non-required 0.6692 66.92%
Eye corrosion - 0.9876 98.76%
Eye irritation - 0.9746 97.46%
Skin irritation - 0.7286 72.86%
Skin corrosion - 0.9279 92.79%
Ames mutagenesis - 0.6861 68.61%
Human Ether-a-go-go-Related Gene inhibition - 0.6909 69.09%
Micronuclear + 0.9800 98.00%
Hepatotoxicity + 0.5711 57.11%
skin sensitisation - 0.8110 81.10%
Respiratory toxicity + 0.8556 85.56%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity + 0.9875 98.75%
Nephrotoxicity - 0.8667 86.67%
Acute Oral Toxicity (c) III 0.5244 52.44%
Estrogen receptor binding - 0.6923 69.23%
Androgen receptor binding - 0.7344 73.44%
Thyroid receptor binding - 0.5763 57.63%
Glucocorticoid receptor binding - 0.6105 61.05%
Aromatase binding + 0.7495 74.95%
PPAR gamma + 0.6421 64.21%
Honey bee toxicity - 0.9040 90.40%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.7000 70.00%
Fish aquatic toxicity - 0.8605 86.05%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.96% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.53% 97.09%
CHEMBL2581 P07339 Cathepsin D 90.92% 98.95%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 87.75% 94.00%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 87.16% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 86.01% 89.00%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 85.08% 95.83%
CHEMBL4040 P28482 MAP kinase ERK2 84.97% 83.82%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 82.46% 99.23%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 81.79% 89.34%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 81.24% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.01% 86.33%
CHEMBL5103 Q969S8 Histone deacetylase 10 80.28% 90.08%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 439686
LOTUS LTS0166478
wikiData Q27101839