3-deoxy-D-glycero-beta-D-galacto-nonulosonic acid

Details

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Internal ID 4861dfa5-82c2-429a-b603-67b6a822359b
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glucuronides > C-glucuronides
IUPAC Name (2S,4S,5R,6R)-2,4,5-trihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C9H16O9/c10-2-4(12)6(14)7-5(13)3(11)1-9(17,18-7)8(15)16/h3-7,10-14,17H,1-2H2,(H,15,16)/t3-,4+,5+,6+,7+,9-/m0/s1
InChI Key CLRLHXKNIYJWAW-YOQZMRDMSA-N
Popularity 5 references in papers

Physical and Chemical Properties

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Molecular Formula C9H16O9
Molecular Weight 268.22 g/mol
Exact Mass 268.07943208 g/mol
Topological Polar Surface Area (TPSA) 168.00 Ų
XlogP -3.50
Atomic LogP (AlogP) -4.02
H-Bond Acceptor 8
H-Bond Donor 7
Rotatable Bonds 4

Synonyms

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beta-KDN
3-deoxy-D-glycero-beta-D-galacto-nonulosonic acid
3-Deoxy-D-Glycero-Beta-D-Galacto-Non-2-Ulopyranosonic Acid
CHEBI:131593
2-keto-3-deoxy-D-glycero-beta-D-galacto-nononic acid
Q27225206
(2S,4S,5R,6R)-2,4,5-Trihydroxy-6-((1R,2R)-1,2,3-trihydroxypropyl)tetrahydro-2H-pyran-2-carboxylic acid
(2S,4S,5R,6R)-2,4,5-trihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydropyran-2-carboxylic acid
120104-31-6

2D Structure

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2D Structure of 3-deoxy-D-glycero-beta-D-galacto-nonulosonic acid

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8255 82.55%
Caco-2 - 0.9222 92.22%
Blood Brain Barrier + 0.6000 60.00%
Human oral bioavailability - 0.6857 68.57%
Subcellular localzation Mitochondria 0.7325 73.25%
OATP2B1 inhibitior - 0.8564 85.64%
OATP1B1 inhibitior + 0.9565 95.65%
OATP1B3 inhibitior + 0.9343 93.43%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.9678 96.78%
P-glycoprotein inhibitior - 0.9691 96.91%
P-glycoprotein substrate - 0.8686 86.86%
CYP3A4 substrate - 0.5142 51.42%
CYP2C9 substrate - 0.8018 80.18%
CYP2D6 substrate - 0.8647 86.47%
CYP3A4 inhibition - 0.9676 96.76%
CYP2C9 inhibition - 0.9864 98.64%
CYP2C19 inhibition - 0.9802 98.02%
CYP2D6 inhibition - 0.9732 97.32%
CYP1A2 inhibition - 0.9833 98.33%
CYP2C8 inhibition - 0.9619 96.19%
CYP inhibitory promiscuity - 0.9925 99.25%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.7675 76.75%
Eye corrosion - 0.9845 98.45%
Eye irritation - 0.9365 93.65%
Skin irritation - 0.7748 77.48%
Skin corrosion - 0.9411 94.11%
Ames mutagenesis - 0.6600 66.00%
Human Ether-a-go-go-Related Gene inhibition - 0.7758 77.58%
Micronuclear - 0.7282 72.82%
Hepatotoxicity - 0.6927 69.27%
skin sensitisation - 0.8873 88.73%
Respiratory toxicity + 0.5222 52.22%
Reproductive toxicity - 0.6222 62.22%
Mitochondrial toxicity - 0.7125 71.25%
Nephrotoxicity - 0.5694 56.94%
Acute Oral Toxicity (c) IV 0.5378 53.78%
Estrogen receptor binding - 0.5915 59.15%
Androgen receptor binding - 0.6272 62.72%
Thyroid receptor binding + 0.5180 51.80%
Glucocorticoid receptor binding + 0.6090 60.90%
Aromatase binding - 0.7317 73.17%
PPAR gamma - 0.6631 66.31%
Honey bee toxicity - 0.9269 92.69%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.7100 71.00%
Fish aquatic toxicity - 0.9323 93.23%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4040 P28482 MAP kinase ERK2 98.53% 83.82%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.86% 96.09%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 95.03% 85.14%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.41% 91.11%
CHEMBL218 P21554 Cannabinoid CB1 receptor 90.19% 96.61%
CHEMBL1806 P11388 DNA topoisomerase II alpha 86.87% 89.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.26% 97.09%
CHEMBL340 P08684 Cytochrome P450 3A4 85.14% 91.19%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 83.96% 91.24%
CHEMBL2581 P07339 Cathepsin D 83.62% 98.95%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 82.78% 98.75%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 10869261
LOTUS LTS0173592
wikiData Q27225206