Crambine A

Details

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Internal ID 309c3434-0869-4718-902e-c988b04c9273
Taxonomy Organoheterocyclic compounds > Pyrrolopyrimidines
IUPAC Name 4-(diaminomethylideneamino)butyl 1-amino-3-undecyl-3,5,6,7-tetrahydropyrrolo[1,2-c]pyrimidine-4-carboxylate
SMILES (Canonical) CCCCCCCCCCCC1C(=C2CCCN2C(=N1)N)C(=O)OCCCCN=C(N)N
SMILES (Isomeric) CCCCCCCCCCCC1C(=C2CCCN2C(=N1)N)C(=O)OCCCCN=C(N)N
InChI InChI=1S/C24H44N6O2/c1-2-3-4-5-6-7-8-9-10-14-19-21(20-15-13-17-30(20)24(27)29-19)22(31)32-18-12-11-16-28-23(25)26/h19H,2-18H2,1H3,(H2,27,29)(H4,25,26,28)
InChI Key LNRWFIMDKWPBJL-UHFFFAOYSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C24H44N6O2
Molecular Weight 448.60 g/mol
Exact Mass 448.35257467 g/mol
Topological Polar Surface Area (TPSA) 132.00 Ų
XlogP 4.00
Atomic LogP (AlogP) 3.55
H-Bond Acceptor 6
H-Bond Donor 3
Rotatable Bonds 16

Synonyms

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CHEMBL1186472
Pyrrolo(1,2-c)pyrimidine-4-carboxylic acid, 1-amino-3,5,6,7-tetrahydro-3-undecyl-, 4-((aminoiminomethyl)amino)butyl ester, (+)-

2D Structure

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2D Structure of Crambine A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9824 98.24%
Caco-2 - 0.7518 75.18%
Blood Brain Barrier + 0.6000 60.00%
Human oral bioavailability - 0.5857 58.57%
Subcellular localzation Mitochondria 0.5028 50.28%
OATP2B1 inhibitior - 0.7144 71.44%
OATP1B1 inhibitior + 0.9107 91.07%
OATP1B3 inhibitior + 0.9392 93.92%
MATE1 inhibitior - 0.6200 62.00%
OCT2 inhibitior - 0.6000 60.00%
BSEP inhibitior + 0.7177 71.77%
P-glycoprotein inhibitior - 0.5156 51.56%
P-glycoprotein substrate + 0.7084 70.84%
CYP3A4 substrate + 0.6003 60.03%
CYP2C9 substrate - 0.6000 60.00%
CYP2D6 substrate - 0.8852 88.52%
CYP3A4 inhibition - 0.9575 95.75%
CYP2C9 inhibition - 0.7099 70.99%
CYP2C19 inhibition - 0.7155 71.55%
CYP2D6 inhibition - 0.7898 78.98%
CYP1A2 inhibition - 0.6499 64.99%
CYP2C8 inhibition - 0.6591 65.91%
CYP inhibitory promiscuity - 0.7526 75.26%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9200 92.00%
Carcinogenicity (trinary) Non-required 0.5613 56.13%
Eye corrosion - 0.9761 97.61%
Eye irritation - 0.8481 84.81%
Skin irritation - 0.7453 74.53%
Skin corrosion - 0.8961 89.61%
Ames mutagenesis - 0.6400 64.00%
Human Ether-a-go-go-Related Gene inhibition - 0.7295 72.95%
Micronuclear + 0.7400 74.00%
Hepatotoxicity - 0.5862 58.62%
skin sensitisation - 0.8195 81.95%
Respiratory toxicity + 0.6667 66.67%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.8500 85.00%
Nephrotoxicity + 0.4777 47.77%
Acute Oral Toxicity (c) III 0.5737 57.37%
Estrogen receptor binding + 0.6163 61.63%
Androgen receptor binding + 0.6180 61.80%
Thyroid receptor binding + 0.5656 56.56%
Glucocorticoid receptor binding - 0.5450 54.50%
Aromatase binding + 0.5946 59.46%
PPAR gamma + 0.5785 57.85%
Honey bee toxicity - 0.9410 94.10%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity + 0.7258 72.58%
Fish aquatic toxicity + 0.9542 95.42%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.48% 96.09%
CHEMBL4462 Q8IXJ6 NAD-dependent deacetylase sirtuin 2 97.91% 90.24%
CHEMBL2581 P07339 Cathepsin D 93.58% 98.95%
CHEMBL230 P35354 Cyclooxygenase-2 93.56% 89.63%
CHEMBL3060 Q9Y345 Glycine transporter 2 93.27% 99.17%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.25% 94.45%
CHEMBL253 P34972 Cannabinoid CB2 receptor 91.71% 97.25%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 91.53% 90.71%
CHEMBL5043 Q6P179 Endoplasmic reticulum aminopeptidase 2 90.13% 91.81%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 90.12% 100.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.53% 86.33%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 88.83% 95.50%
CHEMBL5608 Q16288 NT-3 growth factor receptor 88.80% 95.89%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 88.18% 92.86%
CHEMBL1744525 P43490 Nicotinamide phosphoribosyltransferase 86.65% 96.25%
CHEMBL4072 P07858 Cathepsin B 86.00% 93.67%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 82.80% 91.11%
CHEMBL3137262 O60341 LSD1/CoREST complex 82.49% 97.09%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 82.44% 99.23%
CHEMBL3891 P07384 Calpain 1 81.08% 93.04%
CHEMBL2781 P19634 Sodium/hydrogen exchanger 1 80.73% 90.24%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 80.67% 96.90%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 183100
LOTUS LTS0058095
wikiData Q104399673