CMP-N-glycoloyl-beta-neuraminic acid

Details

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Internal ID 70e3540e-149e-48fa-9a77-1b7395955103
Taxonomy Nucleosides, nucleotides, and analogues > Pyrimidine nucleotides > Pyrimidine nucleotide sugars
IUPAC Name (2R,4S,5R,6R)-2-[[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-4-hydroxy-5-[(2-hydroxyacetyl)amino]-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C20H31N4O17P/c21-10-1-2-24(19(35)22-10)17-15(32)14(31)9(39-17)6-38-42(36,37)41-20(18(33)34)3-7(27)12(23-11(29)5-26)16(40-20)13(30)8(28)4-25/h1-2,7-9,12-17,25-28,30-32H,3-6H2,(H,23,29)(H,33,34)(H,36,37)(H2,21,22,35)/t7-,8+,9+,12+,13+,14+,15+,16+,17+,20+/m0/s1
InChI Key HOEWKBQADMRCLO-UIUGZIMDSA-N
Popularity 10 references in papers

Physical and Chemical Properties

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Molecular Formula C20H31N4O17P
Molecular Weight 630.50 g/mol
Exact Mass 630.14218253 g/mol
Topological Polar Surface Area (TPSA) 341.00 Ų
XlogP -7.40
Atomic LogP (AlogP) -6.30
H-Bond Acceptor 18
H-Bond Donor 11
Rotatable Bonds 12

Synonyms

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Cmp-neu5Gc
CMP-N-glycolylneuraminate
cytidine 5'-[3,5-dideoxy-5-(2-hydroxyacetamido)-D-glycero-beta-D-galacto-non-2-ulopyranosylonic acid monophosphate]
CMP-beta-Neu5Gc
CHEBI:18098
(2R,4S,5R,6R)-2-[[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-4-hydroxy-5-[(2-hydroxyacetyl)amino]-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid
C03691
cytidine-5'-monophosphono-N-glycoloyllneuraminic acid
Q27102819

2D Structure

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2D Structure of CMP-N-glycoloyl-beta-neuraminic acid

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6645 66.45%
Caco-2 - 0.8896 88.96%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.6000 60.00%
Subcellular localzation Nucleus 0.3703 37.03%
OATP2B1 inhibitior - 0.7194 71.94%
OATP1B1 inhibitior + 0.8871 88.71%
OATP1B3 inhibitior + 0.9425 94.25%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.7393 73.93%
P-glycoprotein inhibitior - 0.4314 43.14%
P-glycoprotein substrate + 0.5680 56.80%
CYP3A4 substrate + 0.6753 67.53%
CYP2C9 substrate + 0.6000 60.00%
CYP2D6 substrate - 0.8661 86.61%
CYP3A4 inhibition - 0.6647 66.47%
CYP2C9 inhibition - 0.8741 87.41%
CYP2C19 inhibition - 0.8524 85.24%
CYP2D6 inhibition - 0.8668 86.68%
CYP1A2 inhibition - 0.8963 89.63%
CYP2C8 inhibition + 0.4753 47.53%
CYP inhibitory promiscuity - 0.8819 88.19%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.8800 88.00%
Carcinogenicity (trinary) Non-required 0.4948 49.48%
Eye corrosion - 0.9834 98.34%
Eye irritation - 0.9321 93.21%
Skin irritation - 0.7776 77.76%
Skin corrosion - 0.9286 92.86%
Ames mutagenesis - 0.7700 77.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6504 65.04%
Micronuclear + 0.9800 98.00%
Hepatotoxicity - 0.5313 53.13%
skin sensitisation - 0.8465 84.65%
Respiratory toxicity + 0.8889 88.89%
Reproductive toxicity + 0.9889 98.89%
Mitochondrial toxicity + 0.9500 95.00%
Nephrotoxicity + 0.6786 67.86%
Acute Oral Toxicity (c) III 0.5365 53.65%
Estrogen receptor binding + 0.6765 67.65%
Androgen receptor binding + 0.7525 75.25%
Thyroid receptor binding - 0.5051 50.51%
Glucocorticoid receptor binding + 0.5669 56.69%
Aromatase binding + 0.6806 68.06%
PPAR gamma + 0.6485 64.85%
Honey bee toxicity - 0.7605 76.05%
Biodegradation - 0.6750 67.50%
Crustacea aquatic toxicity - 0.6000 60.00%
Fish aquatic toxicity - 0.5856 58.56%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.14% 96.09%
CHEMBL226 P30542 Adenosine A1 receptor 97.54% 95.93%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 96.54% 95.17%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.64% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.03% 94.45%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 92.75% 99.23%
CHEMBL4040 P28482 MAP kinase ERK2 92.48% 83.82%
CHEMBL3137261 O14744 PRMT5/MEP50 complex 92.06% 100.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.77% 89.00%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 88.84% 80.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.82% 97.09%
CHEMBL2492 P36544 Neuronal acetylcholine receptor protein alpha-7 subunit 87.29% 88.42%
CHEMBL2581 P07339 Cathepsin D 87.09% 98.95%
CHEMBL3384 Q16512 Protein kinase N1 86.58% 80.71%
CHEMBL4101 P17612 cAMP-dependent protein kinase alpha-catalytic subunit 86.22% 82.86%
CHEMBL2107 P61073 C-X-C chemokine receptor type 4 85.97% 93.10%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 84.30% 90.71%
CHEMBL3060 Q9Y345 Glycine transporter 2 84.19% 99.17%
CHEMBL3401 O75469 Pregnane X receptor 83.42% 94.73%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 83.36% 96.00%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 81.91% 97.29%
CHEMBL220 P22303 Acetylcholinesterase 80.73% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 656501
LOTUS LTS0175003
wikiData Q27102819