Clivonine

Details

Top
Internal ID fd186b86-3173-4040-8811-1e7f0447397d
Taxonomy Alkaloids and derivatives > Amaryllidaceae alkaloids > Homolycorine-type amaryllidaceae alkaloids
IUPAC Name (2S,3R,7R,9S,10R)-9-hydroxy-4-methyl-11,16,18-trioxa-4-azapentacyclo[11.7.0.02,10.03,7.015,19]icosa-1(20),13,15(19)-trien-12-one
SMILES (Canonical) CN1CCC2C1C3C(C(C2)O)OC(=O)C4=CC5=C(C=C34)OCO5
SMILES (Isomeric) CN1CC[C@H]2[C@@H]1[C@H]3[C@H]([C@H](C2)O)OC(=O)C4=CC5=C(C=C34)OCO5
InChI InChI=1S/C17H19NO5/c1-18-3-2-8-4-11(19)16-14(15(8)18)9-5-12-13(22-7-21-12)6-10(9)17(20)23-16/h5-6,8,11,14-16,19H,2-4,7H2,1H3/t8-,11+,14+,15-,16+/m1/s1
InChI Key ATGABXDKTMWXAQ-GIFBOUKESA-N
Popularity 9 references in papers

Physical and Chemical Properties

Top
Molecular Formula C17H19NO5
Molecular Weight 317.34 g/mol
Exact Mass 317.12632271 g/mol
Topological Polar Surface Area (TPSA) 68.20 Ų
XlogP 1.50
Atomic LogP (AlogP) 1.12
H-Bond Acceptor 6
H-Bond Donor 1
Rotatable Bonds 0

Synonyms

Top
477-16-7
(2S,3R,7R,9S,10R)-9-hydroxy-4-methyl-11,16,18-trioxa-4-azapentacyclo[11.7.0.02,10.03,7.015,19]icosa-1(20),13,15(19)-trien-12-one
Lycorenan-7-one, 4,12-dihydro-5-hydroxy-1-methyl-9,10-(methylenebis(oxy))-, (5alpha,12beta,13beta)-
CHEMBL520210

2D Structure

Top
2D Structure of Clivonine

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9595 95.95%
Caco-2 + 0.5407 54.07%
Blood Brain Barrier + 0.7750 77.50%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Lysosomes 0.5877 58.77%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9067 90.67%
OATP1B3 inhibitior + 0.9418 94.18%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.5349 53.49%
BSEP inhibitior - 0.6359 63.59%
P-glycoprotein inhibitior - 0.9145 91.45%
P-glycoprotein substrate - 0.5422 54.22%
CYP3A4 substrate + 0.6187 61.87%
CYP2C9 substrate - 0.8019 80.19%
CYP2D6 substrate - 0.6861 68.61%
CYP3A4 inhibition - 0.7621 76.21%
CYP2C9 inhibition - 0.9514 95.14%
CYP2C19 inhibition + 0.6102 61.02%
CYP2D6 inhibition + 0.7153 71.53%
CYP1A2 inhibition + 0.5426 54.26%
CYP2C8 inhibition - 0.9307 93.07%
CYP inhibitory promiscuity - 0.9478 94.78%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.5796 57.96%
Eye corrosion - 0.9878 98.78%
Eye irritation - 0.9621 96.21%
Skin irritation - 0.7795 77.95%
Skin corrosion - 0.9348 93.48%
Ames mutagenesis + 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4481 44.81%
Micronuclear - 0.5500 55.00%
Hepatotoxicity + 0.6625 66.25%
skin sensitisation - 0.8464 84.64%
Respiratory toxicity + 0.8778 87.78%
Reproductive toxicity + 0.9556 95.56%
Mitochondrial toxicity + 0.9125 91.25%
Nephrotoxicity + 0.6093 60.93%
Acute Oral Toxicity (c) III 0.7085 70.85%
Estrogen receptor binding - 0.6338 63.38%
Androgen receptor binding + 0.6422 64.22%
Thyroid receptor binding - 0.6062 60.62%
Glucocorticoid receptor binding + 0.6615 66.15%
Aromatase binding - 0.5372 53.72%
PPAR gamma + 0.5579 55.79%
Honey bee toxicity - 0.7661 76.61%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.5600 56.00%
Fish aquatic toxicity + 0.6454 64.54%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 97.79% 96.77%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.13% 95.56%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 93.78% 85.14%
CHEMBL1806 P11388 DNA topoisomerase II alpha 92.38% 89.00%
CHEMBL2581 P07339 Cathepsin D 90.83% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 90.51% 96.09%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 88.46% 99.23%
CHEMBL2781 P19634 Sodium/hydrogen exchanger 1 87.49% 90.24%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.67% 95.89%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.50% 100.00%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 86.10% 95.58%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 85.60% 93.40%
CHEMBL4530 P00488 Coagulation factor XIII 84.53% 96.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 84.35% 97.25%
CHEMBL2140 P48775 Tryptophan 2,3-dioxygenase 84.15% 98.46%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 83.77% 90.71%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.87% 86.33%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 81.62% 91.11%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 80.01% 92.62%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Clivia miniata
Schisandra chinensis

Cross-Links

Top
PubChem 12303690
NPASS NPC8055
LOTUS LTS0132507
wikiData Q104394885