Clivatine

Details

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Internal ID b5b16f0b-be6a-474d-93e2-1f8a4c3f9df7
Taxonomy Alkaloids and derivatives > Amaryllidaceae alkaloids > Homolycorine-type amaryllidaceae alkaloids
IUPAC Name [(2S,3R,7R,9S,10R)-4-methyl-12-oxo-11,16,18-trioxa-4-azapentacyclo[11.7.0.02,10.03,7.015,19]icosa-1(20),13,15(19)-trien-9-yl] 3-hydroxybutanoate
SMILES (Canonical) CC(CC(=O)OC1CC2CCN(C2C3C1OC(=O)C4=CC5=C(C=C34)OCO5)C)O
SMILES (Isomeric) CC(CC(=O)O[C@H]1C[C@H]2CCN([C@H]2[C@H]3[C@H]1OC(=O)C4=CC5=C(C=C34)OCO5)C)O
InChI InChI=1S/C21H25NO7/c1-10(23)5-17(24)28-16-6-11-3-4-22(2)19(11)18-12-7-14-15(27-9-26-14)8-13(12)21(25)29-20(16)18/h7-8,10-11,16,18-20,23H,3-6,9H2,1-2H3/t10?,11-,16+,18+,19-,20+/m1/s1
InChI Key QYVZOJWDWWFSQK-CXDJBGJCSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C21H25NO7
Molecular Weight 403.40 g/mol
Exact Mass 403.16310214 g/mol
Topological Polar Surface Area (TPSA) 94.50 Ų
XlogP 1.70
Atomic LogP (AlogP) 1.44
H-Bond Acceptor 8
H-Bond Donor 1
Rotatable Bonds 3

Synonyms

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1355-66-4
Lycorenan-7-one, 4,12-dihydro-5-(3-hydroxy-1-oxobutoxy)-1-methyl-9,10-(methylenebis(oxy))-, (5alpha,12beta,13beta)-
NOBILISITINE B
CHEMBL1173549
C21H25NO7
DTXSID60929026
1-Methyl-7-oxo-1,2,3,3a,4,5,5a,7,12b,12c-decahydro-10H-[1,3]dioxolo[6,7][2]benzopyrano[3,4-g]indol-5-yl 3-hydroxybutanoate

2D Structure

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2D Structure of Clivatine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9362 93.62%
Caco-2 + 0.5800 58.00%
Blood Brain Barrier + 0.8750 87.50%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Lysosomes 0.4364 43.64%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8912 89.12%
OATP1B3 inhibitior + 0.9286 92.86%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.5599 55.99%
BSEP inhibitior + 0.6534 65.34%
P-glycoprotein inhibitior - 0.5088 50.88%
P-glycoprotein substrate + 0.6102 61.02%
CYP3A4 substrate + 0.6682 66.82%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7837 78.37%
CYP3A4 inhibition - 0.5266 52.66%
CYP2C9 inhibition - 0.9338 93.38%
CYP2C19 inhibition - 0.6662 66.62%
CYP2D6 inhibition - 0.6284 62.84%
CYP1A2 inhibition - 0.6930 69.30%
CYP2C8 inhibition - 0.7831 78.31%
CYP inhibitory promiscuity - 0.9257 92.57%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.5751 57.51%
Eye corrosion - 0.9899 98.99%
Eye irritation - 0.9674 96.74%
Skin irritation - 0.8169 81.69%
Skin corrosion - 0.9501 95.01%
Ames mutagenesis - 0.5800 58.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3763 37.63%
Micronuclear + 0.5300 53.00%
Hepatotoxicity + 0.5824 58.24%
skin sensitisation - 0.8664 86.64%
Respiratory toxicity + 0.7889 78.89%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity + 0.9125 91.25%
Nephrotoxicity + 0.5093 50.93%
Acute Oral Toxicity (c) III 0.7453 74.53%
Estrogen receptor binding - 0.5000 50.00%
Androgen receptor binding + 0.6641 66.41%
Thyroid receptor binding - 0.6051 60.51%
Glucocorticoid receptor binding + 0.7943 79.43%
Aromatase binding + 0.5180 51.80%
PPAR gamma + 0.6220 62.20%
Honey bee toxicity - 0.7441 74.41%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.5700 57.00%
Fish aquatic toxicity + 0.7314 73.14%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 97.73% 96.77%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.61% 96.09%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 96.14% 85.14%
CHEMBL2581 P07339 Cathepsin D 94.67% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.57% 95.56%
CHEMBL1806 P11388 DNA topoisomerase II alpha 90.18% 89.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 89.65% 95.89%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 88.46% 94.45%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 87.89% 95.89%
CHEMBL253 P34972 Cannabinoid CB2 receptor 87.71% 97.25%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 87.09% 92.62%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.18% 86.33%
CHEMBL2781 P19634 Sodium/hydrogen exchanger 1 86.01% 90.24%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 83.80% 99.23%
CHEMBL2413 P32246 C-C chemokine receptor type 1 83.64% 89.50%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 82.97% 95.17%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 82.82% 91.11%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 82.80% 90.71%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 82.52% 96.47%
CHEMBL4685 P14902 Indoleamine 2,3-dioxygenase 81.46% 96.38%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 80.30% 98.75%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 80.27% 95.58%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Clivia miniata
Clivia nobilis

Cross-Links

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PubChem 3083698
LOTUS LTS0033625
wikiData Q82903860