Clitocine

Details

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Internal ID d29f509b-66ba-4c68-9dad-6dad9fc4ba43
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > Glycosylamines
IUPAC Name (2R,3R,4S,5R)-2-[(6-amino-5-nitropyrimidin-4-yl)amino]-5-(hydroxymethyl)oxolane-3,4-diol
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C9H13N5O6/c10-7-4(14(18)19)8(12-2-11-7)13-9-6(17)5(16)3(1-15)20-9/h2-3,5-6,9,15-17H,1H2,(H3,10,11,12,13)/t3-,5-,6-,9-/m1/s1
InChI Key OHEMBWZZEKCBAS-UUOKFMHZSA-N
Popularity 17 references in papers

Physical and Chemical Properties

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Molecular Formula C9H13N5O6
Molecular Weight 287.23 g/mol
Exact Mass 287.08658315 g/mol
Topological Polar Surface Area (TPSA) 180.00 Ų
XlogP -0.40
Atomic LogP (AlogP) -2.18
H-Bond Acceptor 10
H-Bond Donor 5
Rotatable Bonds 4

Synonyms

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105798-74-1
9Z4QXQ98QW
CHEMBL304179
(2R,3R,4S,5R)-2-[(6-amino-5-nitropyrimidin-4-yl)amino]-5-(hydroxymethyl)oxolane-3,4-diol
beta-D-Ribofuranosylamine, N-(6-amino-5-nitro-4-pyrimidinyl)-
6-Amino-5-nitro-4-(ribofuranosylamino)pyrimidine
starbld0000883
UNII-9Z4QXQ98QW
SCHEMBL182039
DTXSID30909739
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Clitocine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.4714 47.14%
Caco-2 - 0.9193 91.93%
Blood Brain Barrier + 0.6250 62.50%
Human oral bioavailability - 0.5286 52.86%
Subcellular localzation Mitochondria 0.4503 45.03%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9007 90.07%
OATP1B3 inhibitior + 0.9437 94.37%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.9319 93.19%
P-glycoprotein inhibitior - 0.9334 93.34%
P-glycoprotein substrate - 0.8934 89.34%
CYP3A4 substrate - 0.5200 52.00%
CYP2C9 substrate - 0.5935 59.35%
CYP2D6 substrate - 0.8766 87.66%
CYP3A4 inhibition - 0.9204 92.04%
CYP2C9 inhibition - 0.9080 90.80%
CYP2C19 inhibition - 0.8294 82.94%
CYP2D6 inhibition - 0.9266 92.66%
CYP1A2 inhibition - 0.8025 80.25%
CYP2C8 inhibition - 0.8514 85.14%
CYP inhibitory promiscuity - 0.9308 93.08%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.8800 88.00%
Carcinogenicity (trinary) Non-required 0.4369 43.69%
Eye corrosion - 0.9837 98.37%
Eye irritation - 0.8872 88.72%
Skin irritation - 0.7420 74.20%
Skin corrosion - 0.9245 92.45%
Ames mutagenesis + 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5856 58.56%
Micronuclear + 0.9900 99.00%
Hepatotoxicity + 0.5929 59.29%
skin sensitisation - 0.8085 80.85%
Respiratory toxicity + 0.8556 85.56%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.9000 90.00%
Nephrotoxicity + 0.5681 56.81%
Acute Oral Toxicity (c) III 0.6350 63.50%
Estrogen receptor binding - 0.5063 50.63%
Androgen receptor binding - 0.5656 56.56%
Thyroid receptor binding + 0.5720 57.20%
Glucocorticoid receptor binding - 0.7150 71.50%
Aromatase binding + 0.6642 66.42%
PPAR gamma + 0.7193 71.93%
Honey bee toxicity - 0.8712 87.12%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.8400 84.00%
Fish aquatic toxicity - 0.9317 93.17%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3401 O75469 Pregnane X receptor 92.50% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 92.18% 99.17%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.17% 96.09%
CHEMBL3589 P55263 Adenosine kinase 91.12% 98.05%
CHEMBL3038469 P24941 CDK2/Cyclin A 88.89% 91.38%
CHEMBL221 P23219 Cyclooxygenase-1 88.75% 90.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.14% 86.33%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 85.90% 95.83%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 84.80% 89.34%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 81.72% 91.11%
CHEMBL3137262 O60341 LSD1/CoREST complex 81.56% 97.09%
CHEMBL2107 P61073 C-X-C chemokine receptor type 4 80.70% 93.10%
CHEMBL1741221 Q9Y4P1 Cysteine protease ATG4B 80.01% 87.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 129111
LOTUS LTS0144052
wikiData Q16949273