Cinodine II

Details

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Internal ID a16e2349-0f02-4f05-85ca-7097e4119a6c
Taxonomy Phenylpropanoids and polyketides > Cinnamic acids and derivatives > Cinnamic acid amides
IUPAC Name (E)-3-[4-[(2R,3R,4S,5S,6R)-5-[[(2S,3R,4R,5R)-5-[[(3aS,6S,7R,7aR)-7-(carbamoylamino)-2-oxo-1,3a,4,6,7,7a-hexahydropyrano[4,3-d][1,3]oxazol-6-yl]oxy]-3-(carbamoylamino)-4-hydroxyoxan-2-yl]carbamoylamino]-3-(diaminomethylideneamino)-4-hydroxy-6-methyloxan-2-yl]oxyphenyl]-N-[3-(4-aminobutylamino)propyl]prop-2-enamide
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C37H59N13O13/c1-17-23(29(53)27(45-33(39)40)32(60-17)61-19-8-5-18(6-9-19)7-10-22(51)44-14-4-13-43-12-3-2-11-38)48-36(56)50-30-26(47-35(42)55)28(52)21(16-58-30)62-31-25(46-34(41)54)24-20(15-59-31)63-37(57)49-24/h5-10,17,20-21,23-32,43,52-53H,2-4,11-16,38H2,1H3,(H,44,51)(H,49,57)(H4,39,40,45)(H3,41,46,54)(H3,42,47,55)(H2,48,50,56)/b10-7+/t17-,20-,21-,23-,24+,25-,26-,27-,28+,29+,30+,31+,32-/m1/s1
InChI Key JFKMOESWBQOEER-DXFZHRLCSA-N
Popularity 6 references in papers

Physical and Chemical Properties

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Molecular Formula C37H59N13O13
Molecular Weight 893.90 g/mol
Exact Mass 893.43552899 g/mol
Topological Polar Surface Area (TPSA) 408.00 Ų
XlogP -5.30
Atomic LogP (AlogP) -4.66
H-Bond Acceptor 16
H-Bond Donor 14
Rotatable Bonds 19

Synonyms

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60830-75-3
3P9D2455VP
(E)-N-(3-((4-aminobutyl)amino)propyl)-3-(4-(((2R,3R,4S,5S,6R)-3-guanidino-4-hydroxy-5-(3-((2S,3R,4R,5R)-4-hydroxy-5-(((3aS,6S,7R,7aR)-2-oxo-7-ureidohexahydro-2H-pyrano[4,3-d]oxazol-6-yl)oxy)-3-ureidotetrahydro-2H-pyran-2-yl)ureido)-6-methyltetrahydro-2H-pyran-2-yl)oxy)phenyl)acrylamide
UNII-3P9D2455VP
LL-BM123 gamma, (Z)-
LL-BMgamma2
Antibiotic LL-BM123 gamma, (Z)-
LL-BM123 gamma, (E)-
NIOSH/CB9438000
CINODINE .GAMMA.(SUB 2)
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Cinodine II

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8389 83.89%
Caco-2 - 0.8636 86.36%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability - 0.7143 71.43%
Subcellular localzation Mitochondria 0.3981 39.81%
OATP2B1 inhibitior - 0.8563 85.63%
OATP1B1 inhibitior + 0.8303 83.03%
OATP1B3 inhibitior + 0.9397 93.97%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.6500 65.00%
BSEP inhibitior + 0.9101 91.01%
P-glycoprotein inhibitior + 0.7442 74.42%
P-glycoprotein substrate + 0.8446 84.46%
CYP3A4 substrate + 0.7219 72.19%
CYP2C9 substrate - 0.8020 80.20%
CYP2D6 substrate - 0.8368 83.68%
CYP3A4 inhibition - 0.8657 86.57%
CYP2C9 inhibition - 0.8962 89.62%
CYP2C19 inhibition - 0.8683 86.83%
CYP2D6 inhibition - 0.8852 88.52%
CYP1A2 inhibition - 0.8287 82.87%
CYP2C8 inhibition + 0.7735 77.35%
CYP inhibitory promiscuity - 0.9607 96.07%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.5764 57.64%
Eye corrosion - 0.9840 98.40%
Eye irritation - 0.9030 90.30%
Skin irritation - 0.7616 76.16%
Skin corrosion - 0.9243 92.43%
Ames mutagenesis + 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7422 74.22%
Micronuclear + 0.7700 77.00%
Hepatotoxicity - 0.5914 59.14%
skin sensitisation - 0.8252 82.52%
Respiratory toxicity + 0.7222 72.22%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.8000 80.00%
Nephrotoxicity - 0.9361 93.61%
Acute Oral Toxicity (c) III 0.5740 57.40%
Estrogen receptor binding + 0.8404 84.04%
Androgen receptor binding + 0.6815 68.15%
Thyroid receptor binding + 0.5655 56.55%
Glucocorticoid receptor binding + 0.6614 66.14%
Aromatase binding + 0.6570 65.70%
PPAR gamma + 0.7916 79.16%
Honey bee toxicity - 0.6981 69.81%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity + 0.5900 59.00%
Fish aquatic toxicity - 0.3920 39.20%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.65% 91.11%
CHEMBL3492 P49721 Proteasome Macropain subunit 98.52% 90.24%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.20% 96.09%
CHEMBL2581 P07339 Cathepsin D 97.20% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 96.27% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 95.53% 97.09%
CHEMBL4208 P20618 Proteasome component C5 95.04% 90.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 94.54% 86.33%
CHEMBL3060 Q9Y345 Glycine transporter 2 94.25% 99.17%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.11% 94.45%
CHEMBL221 P23219 Cyclooxygenase-1 92.73% 90.17%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 91.76% 96.00%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 90.76% 90.71%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 88.60% 92.88%
CHEMBL4581 P52732 Kinesin-like protein 1 87.46% 93.18%
CHEMBL2179 P04062 Beta-glucocerebrosidase 87.21% 85.31%
CHEMBL2039 P27338 Monoamine oxidase B 86.89% 92.51%
CHEMBL3392948 Q9NP59 Solute carrier family 40 member 1 85.09% 95.00%
CHEMBL5028 O14672 ADAM10 84.62% 97.50%
CHEMBL3437 Q16853 Amine oxidase, copper containing 84.51% 94.00%
CHEMBL4530 P00488 Coagulation factor XIII 84.03% 96.00%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 83.72% 91.71%
CHEMBL2964 P36507 Dual specificity mitogen-activated protein kinase kinase 2 83.42% 80.00%
CHEMBL3714130 P46095 G-protein coupled receptor 6 83.10% 97.36%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.67% 95.89%
CHEMBL3922 P50579 Methionine aminopeptidase 2 82.55% 97.28%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 82.15% 94.33%
CHEMBL2072 P35499 Sodium channel protein type IV alpha subunit 82.06% 92.32%
CHEMBL255 P29275 Adenosine A2b receptor 81.63% 98.59%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 81.39% 95.89%
CHEMBL4481 P35228 Nitric oxide synthase, inducible 80.98% 94.80%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 6540486
LOTUS LTS0173168
wikiData Q27257853