Cimigenol-3-O-xylopyranosyl-3-xylpyranoside

Details

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Internal ID 1f9ac881-3252-45e7-b426-e9f207beb5d4
Taxonomy Lipids and lipid-like molecules > Steroids and steroid derivatives > Steroidal glycosides > Steroidal saponins > Cucurbitacin glycosides
IUPAC Name (2S,3R,4S,5R)-2-[(2S,3R,4S,5R)-3,5-dihydroxy-2-[[(2R,3S,17R,18R,19R)-2-hydroxy-22-(2-hydroxypropan-2-yl)-3,8,8,17,19-pentamethyl-23,24-dioxaheptacyclo[19.2.1.01,18.03,17.04,14.07,12.012,14]tetracosan-9-yl]oxy]oxan-4-yl]oxyoxane-3,4,5-triol
SMILES (Canonical) CC1CC2C(OC3(C1C4(CCC56CC57CCC(C(C7CCC6C4(C3O)C)(C)C)OC8C(C(C(CO8)O)OC9C(C(C(CO9)O)O)O)O)C)O2)C(C)(C)O
SMILES (Isomeric) C[C@@H]1CC2C(OC3([C@H]1[C@]4(CCC56CC57CCC(C(C7CCC6[C@@]4([C@H]3O)C)(C)C)O[C@H]8[C@@H]([C@H]([C@@H](CO8)O)O[C@H]9[C@@H]([C@H]([C@@H](CO9)O)O)O)O)C)O2)C(C)(C)O
InChI InChI=1S/C40H64O13/c1-18-14-21-30(35(4,5)47)53-40(52-21)29(18)36(6)12-13-39-17-38(39)11-10-24(34(2,3)22(38)8-9-23(39)37(36,7)33(40)46)50-32-27(45)28(20(42)16-49-32)51-31-26(44)25(43)19(41)15-48-31/h18-33,41-47H,8-17H2,1-7H3/t18-,19-,20-,21?,22?,23?,24?,25+,26-,27-,28+,29-,30?,31+,32+,33-,36-,37-,38?,39?,40?/m1/s1
InChI Key FQXVWSGUAKXSLO-WQYAHHOZSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C40H64O13
Molecular Weight 752.90 g/mol
Exact Mass 752.43469209 g/mol
Topological Polar Surface Area (TPSA) 197.00 Ų
XlogP 2.20
Atomic LogP (AlogP) 1.58
H-Bond Acceptor 13
H-Bond Donor 7
Rotatable Bonds 5

Synonyms

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C40H64O13
C40-H64-O13
DTXSID80934571
13-Hydroxy-11-(2-hydroxypropan-2-yl)-1,1,7a,8,13a-pentamethyloctadecahydro-5H-10,12a-epoxycyclopropa[1',8'a]naphtho[2',1':4,5]indeno[2,1-b]oxepin-2-yl 3-O-pentopyranosylpentopyranoside
beta-D-Xylopyranoside, (3beta,15alpha,16alpha,23R,24S)-16,23:16,24-diepoxy-15,25-dihydroxy-9,19-cyclolanostan-3-yl 3-O-beta-D-xylopyranosyl-

2D Structure

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2D Structure of Cimigenol-3-O-xylopyranosyl-3-xylpyranoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6673 66.73%
Caco-2 - 0.8740 87.40%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.7143 71.43%
Subcellular localzation Mitochondria 0.6311 63.11%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8553 85.53%
OATP1B3 inhibitior + 0.9375 93.75%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.5500 55.00%
BSEP inhibitior - 0.8080 80.80%
P-glycoprotein inhibitior + 0.7443 74.43%
P-glycoprotein substrate + 0.5842 58.42%
CYP3A4 substrate + 0.7208 72.08%
CYP2C9 substrate - 0.8018 80.18%
CYP2D6 substrate - 0.8266 82.66%
CYP3A4 inhibition - 0.9399 93.99%
CYP2C9 inhibition - 0.8171 81.71%
CYP2C19 inhibition - 0.8255 82.55%
CYP2D6 inhibition - 0.9409 94.09%
CYP1A2 inhibition - 0.8814 88.14%
CYP2C8 inhibition + 0.7616 76.16%
CYP inhibitory promiscuity - 0.9676 96.76%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.6045 60.45%
Eye corrosion - 0.9883 98.83%
Eye irritation - 0.9102 91.02%
Skin irritation - 0.7188 71.88%
Skin corrosion - 0.9396 93.96%
Ames mutagenesis - 0.5754 57.54%
Human Ether-a-go-go-Related Gene inhibition + 0.6459 64.59%
Micronuclear - 0.7800 78.00%
Hepatotoxicity - 0.6875 68.75%
skin sensitisation - 0.8921 89.21%
Respiratory toxicity - 0.5000 50.00%
Reproductive toxicity + 0.7111 71.11%
Mitochondrial toxicity + 0.5750 57.50%
Nephrotoxicity - 0.7914 79.14%
Acute Oral Toxicity (c) I 0.5609 56.09%
Estrogen receptor binding + 0.6337 63.37%
Androgen receptor binding + 0.7529 75.29%
Thyroid receptor binding - 0.5849 58.49%
Glucocorticoid receptor binding + 0.5629 56.29%
Aromatase binding + 0.6780 67.80%
PPAR gamma + 0.7050 70.50%
Honey bee toxicity - 0.6426 64.26%
Biodegradation - 0.6750 67.50%
Crustacea aquatic toxicity + 0.5900 59.00%
Fish aquatic toxicity + 0.8917 89.17%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 99.15% 97.25%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.79% 91.11%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 96.20% 96.77%
CHEMBL241 Q14432 Phosphodiesterase 3A 92.01% 92.94%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 91.65% 92.88%
CHEMBL5888 Q99558 Mitogen-activated protein kinase kinase kinase 14 91.52% 100.00%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 91.48% 97.14%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.29% 97.09%
CHEMBL325 Q13547 Histone deacetylase 1 90.84% 95.92%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.98% 96.09%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 89.10% 96.95%
CHEMBL1902 P62942 FK506-binding protein 1A 87.82% 97.05%
CHEMBL4051 P13569 Cystic fibrosis transmembrane conductance regulator 87.54% 95.71%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 87.00% 89.34%
CHEMBL1937 Q92769 Histone deacetylase 2 85.67% 94.75%
CHEMBL206 P03372 Estrogen receptor alpha 85.33% 97.64%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 85.23% 82.69%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 85.02% 95.58%
CHEMBL1914 P06276 Butyrylcholinesterase 84.90% 95.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.85% 95.89%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.54% 89.00%
CHEMBL218 P21554 Cannabinoid CB1 receptor 83.34% 96.61%
CHEMBL2243 O00519 Anandamide amidohydrolase 83.33% 97.53%
CHEMBL259 P32245 Melanocortin receptor 4 83.09% 95.38%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 82.98% 98.75%
CHEMBL1907601 P11802 Cyclin-dependent kinase 4/cyclin D1 82.95% 98.99%
CHEMBL5469 Q14289 Protein tyrosine kinase 2 beta 82.92% 91.03%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 82.13% 95.56%
CHEMBL1994 P08235 Mineralocorticoid receptor 81.83% 100.00%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 81.68% 100.00%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 81.28% 91.07%
CHEMBL3746 P80365 11-beta-hydroxysteroid dehydrogenase 2 80.89% 94.78%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 80.87% 97.33%
CHEMBL2035 P08912 Muscarinic acetylcholine receptor M5 80.72% 94.62%
CHEMBL1871 P10275 Androgen Receptor 80.04% 96.43%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Actaea cimicifuga
Actaea dahurica

Cross-Links

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PubChem 192606
NPASS NPC29939