Ceridimine

Details

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Internal ID 2185cf53-850b-4c79-871f-4f3a0fb2a03a
Taxonomy Alkaloids and derivatives > Vobasan alkaloids
IUPAC Name methyl (1S,12R,14S,15E)-12-[3-(2-aminoethyl)-1H-indol-6-yl]-15-ethylidene-17-methyl-10,17-diazatetracyclo[12.3.1.03,11.04,9]octadeca-3(11),4,6,8-tetraene-18-carboxylate
SMILES (Canonical) CC=C1CN(C2CC3=C(C(CC1C2C(=O)OC)C4=CC5=C(C=C4)C(=CN5)CCN)NC6=CC=CC=C36)C
SMILES (Isomeric) C/C=C\1/CN([C@H]2CC3=C([C@H](C[C@H]1C2C(=O)OC)C4=CC5=C(C=C4)C(=CN5)CCN)NC6=CC=CC=C36)C
InChI InChI=1S/C31H36N4O2/c1-4-18-17-35(2)28-15-25-22-7-5-6-8-26(22)34-30(25)24(14-23(18)29(28)31(36)37-3)19-9-10-21-20(11-12-32)16-33-27(21)13-19/h4-10,13,16,23-24,28-29,33-34H,11-12,14-15,17,32H2,1-3H3/b18-4-/t23-,24-,28+,29?/m1/s1
InChI Key ZOBHQOIVLKIBTQ-SBSBCDAMSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C31H36N4O2
Molecular Weight 496.60 g/mol
Exact Mass 496.28382640 g/mol
Topological Polar Surface Area (TPSA) 87.10 Ų
XlogP 3.90
Atomic LogP (AlogP) 4.89
H-Bond Acceptor 4
H-Bond Donor 3
Rotatable Bonds 4

Synonyms

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CHEBI:141883

2D Structure

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2D Structure of Ceridimine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9842 98.42%
Caco-2 - 0.6225 62.25%
Blood Brain Barrier + 0.7250 72.50%
Human oral bioavailability - 0.6857 68.57%
Subcellular localzation Mitochondria 0.5022 50.22%
OATP2B1 inhibitior - 0.8591 85.91%
OATP1B1 inhibitior + 0.8417 84.17%
OATP1B3 inhibitior + 0.9365 93.65%
MATE1 inhibitior - 0.6237 62.37%
OCT2 inhibitior - 0.6000 60.00%
BSEP inhibitior + 0.9853 98.53%
P-glycoprotein inhibitior + 0.9523 95.23%
P-glycoprotein substrate + 0.7759 77.59%
CYP3A4 substrate + 0.7267 72.67%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.6667 66.67%
CYP3A4 inhibition - 0.5804 58.04%
CYP2C9 inhibition - 0.6996 69.96%
CYP2C19 inhibition - 0.8155 81.55%
CYP2D6 inhibition - 0.5253 52.53%
CYP1A2 inhibition + 0.6172 61.72%
CYP2C8 inhibition + 0.7415 74.15%
CYP inhibitory promiscuity - 0.7751 77.51%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.6535 65.35%
Eye corrosion - 0.9868 98.68%
Eye irritation - 0.9856 98.56%
Skin irritation - 0.7674 76.74%
Skin corrosion - 0.9164 91.64%
Ames mutagenesis - 0.5100 51.00%
Human Ether-a-go-go-Related Gene inhibition + 0.9407 94.07%
Micronuclear - 0.5000 50.00%
Hepatotoxicity - 0.7000 70.00%
skin sensitisation - 0.8595 85.95%
Respiratory toxicity + 0.8889 88.89%
Reproductive toxicity + 0.9778 97.78%
Mitochondrial toxicity + 0.9250 92.50%
Nephrotoxicity - 0.7485 74.85%
Acute Oral Toxicity (c) III 0.5271 52.71%
Estrogen receptor binding + 0.7476 74.76%
Androgen receptor binding + 0.7292 72.92%
Thyroid receptor binding + 0.6908 69.08%
Glucocorticoid receptor binding + 0.8312 83.12%
Aromatase binding + 0.5325 53.25%
PPAR gamma + 0.6141 61.41%
Honey bee toxicity - 0.7778 77.78%
Biodegradation - 0.9750 97.50%
Crustacea aquatic toxicity - 0.6200 62.00%
Fish aquatic toxicity + 0.9522 95.22%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.66% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.19% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 97.62% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 96.97% 97.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 95.69% 94.45%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 95.52% 96.95%
CHEMBL1914 P06276 Butyrylcholinesterase 93.91% 95.00%
CHEMBL2535 P11166 Glucose transporter 92.81% 98.75%
CHEMBL2581 P07339 Cathepsin D 92.64% 98.95%
CHEMBL222 P23975 Norepinephrine transporter 91.50% 96.06%
CHEMBL255 P29275 Adenosine A2b receptor 91.15% 98.59%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 90.93% 97.21%
CHEMBL228 P31645 Serotonin transporter 89.85% 95.51%
CHEMBL253 P34972 Cannabinoid CB2 receptor 89.76% 97.25%
CHEMBL3155 P34969 Serotonin 7 (5-HT7) receptor 88.01% 90.71%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 87.65% 89.62%
CHEMBL3060 Q9Y345 Glycine transporter 2 86.89% 99.17%
CHEMBL4208 P20618 Proteasome component C5 86.24% 90.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 85.69% 89.00%
CHEMBL3230 O95977 Sphingosine 1-phosphate receptor Edg-6 83.79% 94.01%
CHEMBL238 Q01959 Dopamine transporter 83.27% 95.88%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 81.20% 94.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Tabernaemontana cerifera
Tabernaemontana cymosa

Cross-Links

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PubChem 134716651
LOTUS LTS0026955
wikiData Q104403611