Crambene

Details

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Internal ID c7f78454-0173-478d-b587-99b5bdaf1f1c
Taxonomy Organic oxygen compounds > Organooxygen compounds > Alcohols and polyols > Secondary alcohols
IUPAC Name (3S)-3-hydroxypent-4-enenitrile
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C5H7NO/c1-2-5(7)3-4-6/h2,5,7H,1,3H2/t5-/m1/s1
InChI Key PBCLOVRWBLGJQA-RXMQYKEDSA-N
Popularity 10 references in papers

Physical and Chemical Properties

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Molecular Formula C5H7NO
Molecular Weight 97.12 g/mol
Exact Mass 97.052763847 g/mol
Topological Polar Surface Area (TPSA) 44.00 Ų
XlogP -0.10
Atomic LogP (AlogP) 0.45
H-Bond Acceptor 2
H-Bond Donor 1
Rotatable Bonds 2

Synonyms

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6071-81-4
4-Pentenenitrile, 3-hydroxy-, (S)-
Butene, (S)-1-cyano-2-hydroxy-3-
S-3-Hydroxy-4-pentenonitrile
S-1-Cyano-2-hydroxy-3-buten
CHEMBL2270347
S-1-Cyano-2-hydroxy-3-butene
(S)-3-Hydroxypent-4-enenitrile
DTXSID601318721
4-Pentenonitrile, 3-hydroxy-, S-
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Crambene

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9884 98.84%
Caco-2 + 0.5312 53.12%
Blood Brain Barrier + 0.8250 82.50%
Human oral bioavailability - 0.5429 54.29%
Subcellular localzation Mitochondria 0.4349 43.49%
OATP2B1 inhibitior - 0.8666 86.66%
OATP1B1 inhibitior + 0.9327 93.27%
OATP1B3 inhibitior + 0.9521 95.21%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior - 0.9052 90.52%
P-glycoprotein inhibitior - 0.9873 98.73%
P-glycoprotein substrate - 0.9876 98.76%
CYP3A4 substrate - 0.7114 71.14%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.6921 69.21%
CYP3A4 inhibition - 0.8917 89.17%
CYP2C9 inhibition - 0.8593 85.93%
CYP2C19 inhibition - 0.7416 74.16%
CYP2D6 inhibition - 0.9443 94.43%
CYP1A2 inhibition - 0.6394 63.94%
CYP2C8 inhibition - 0.9759 97.59%
CYP inhibitory promiscuity - 0.8712 87.12%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) + 0.5400 54.00%
Carcinogenicity (trinary) Non-required 0.7564 75.64%
Eye corrosion + 0.8615 86.15%
Eye irritation + 0.9657 96.57%
Skin irritation + 0.6267 62.67%
Skin corrosion + 0.7556 75.56%
Ames mutagenesis - 0.7598 75.98%
Human Ether-a-go-go-Related Gene inhibition - 0.5910 59.10%
Micronuclear - 0.7341 73.41%
Hepatotoxicity + 0.7375 73.75%
skin sensitisation - 0.6234 62.34%
Respiratory toxicity - 0.7556 75.56%
Reproductive toxicity - 0.5111 51.11%
Mitochondrial toxicity - 0.7250 72.50%
Nephrotoxicity + 0.4661 46.61%
Acute Oral Toxicity (c) II 0.7401 74.01%
Estrogen receptor binding - 0.8606 86.06%
Androgen receptor binding - 0.9437 94.37%
Thyroid receptor binding - 0.8471 84.71%
Glucocorticoid receptor binding - 0.6599 65.99%
Aromatase binding - 0.9046 90.46%
PPAR gamma - 0.8531 85.31%
Honey bee toxicity + 0.6645 66.45%
Biodegradation + 0.6250 62.50%
Crustacea aquatic toxicity - 0.6900 69.00%
Fish aquatic toxicity - 0.9234 92.34%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 87.43% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 84.97% 96.09%
CHEMBL2581 P07339 Cathepsin D 81.58% 98.95%
CHEMBL1871 P10275 Androgen Receptor 81.30% 96.43%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 80.60% 95.58%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Brassica napus
Crambe hispanica subsp. abyssinica

Cross-Links

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PubChem 10654175
LOTUS LTS0104970
wikiData Q105205070