Burkholdac A

Details

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Internal ID 3dbd1824-8d35-43cc-8059-b92a45668140
Taxonomy Organic acids and derivatives > Peptidomimetics > Depsipeptides > Cyclic depsipeptides
IUPAC Name (15E)-5-hydroxy-20-(2-methylsulfanylethyl)-6-propan-2-yl-2-oxa-11,12-dithia-7,19,22-triazabicyclo[7.7.6]docos-15-ene-3,8,18,21-tetrone
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C22H35N3O6S3/c1-13(2)20-17(26)11-19(28)31-14-6-4-5-8-33-34-12-16(22(30)25-20)24-21(29)15(7-9-32-3)23-18(27)10-14/h4,6,13-17,20,26H,5,7-12H2,1-3H3,(H,23,27)(H,24,29)(H,25,30)/b6-4+
InChI Key ZRJPMGCEOCZSQC-GQCTYLIASA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C22H35N3O6S3
Molecular Weight 533.70 g/mol
Exact Mass 533.16879937 g/mol
Topological Polar Surface Area (TPSA) 210.00 Ų
XlogP 1.00
Atomic LogP (AlogP) 1.26
H-Bond Acceptor 9
H-Bond Donor 4
Rotatable Bonds 4

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of Burkholdac A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.5525 55.25%
Caco-2 - 0.8403 84.03%
Blood Brain Barrier - 0.8750 87.50%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.6248 62.48%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8229 82.29%
OATP1B3 inhibitior + 0.9146 91.46%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior + 0.8072 80.72%
P-glycoprotein inhibitior - 0.4383 43.83%
P-glycoprotein substrate + 0.7826 78.26%
CYP3A4 substrate + 0.6329 63.29%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8648 86.48%
CYP3A4 inhibition - 0.8048 80.48%
CYP2C9 inhibition - 0.8739 87.39%
CYP2C19 inhibition - 0.8628 86.28%
CYP2D6 inhibition - 0.9202 92.02%
CYP1A2 inhibition - 0.8623 86.23%
CYP2C8 inhibition + 0.4940 49.40%
CYP inhibitory promiscuity - 0.9966 99.66%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.7900 79.00%
Carcinogenicity (trinary) Non-required 0.5608 56.08%
Eye corrosion - 0.9848 98.48%
Eye irritation - 0.9576 95.76%
Skin irritation - 0.7626 76.26%
Skin corrosion - 0.9211 92.11%
Ames mutagenesis + 0.5200 52.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6606 66.06%
Micronuclear + 0.7000 70.00%
Hepatotoxicity - 0.6324 63.24%
skin sensitisation - 0.8486 84.86%
Respiratory toxicity + 0.8111 81.11%
Reproductive toxicity + 0.8444 84.44%
Mitochondrial toxicity + 0.7784 77.84%
Nephrotoxicity + 0.4592 45.92%
Acute Oral Toxicity (c) III 0.6068 60.68%
Estrogen receptor binding + 0.6481 64.81%
Androgen receptor binding + 0.5209 52.09%
Thyroid receptor binding - 0.6253 62.53%
Glucocorticoid receptor binding + 0.7367 73.67%
Aromatase binding - 0.5087 50.87%
PPAR gamma + 0.7561 75.61%
Honey bee toxicity - 0.7080 70.80%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity + 0.5800 58.00%
Fish aquatic toxicity + 0.8064 80.64%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL325 Q13547 Histone deacetylase 1 0.2 nM
336.6 nM
IC50
IC50
via Super-PRED
via Super-PRED
CHEMBL1865 Q9UBN7 Histone deacetylase 6 780 nM
IC50
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 97.53% 85.14%
CHEMBL2581 P07339 Cathepsin D 97.28% 98.95%
CHEMBL253 P34972 Cannabinoid CB2 receptor 96.42% 97.25%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.20% 91.11%
CHEMBL5103 Q969S8 Histone deacetylase 10 94.28% 90.08%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.33% 96.09%
CHEMBL3310 Q96DB2 Histone deacetylase 11 90.43% 88.56%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.81% 95.56%
CHEMBL4040 P28482 MAP kinase ERK2 89.57% 83.82%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 89.03% 90.71%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.27% 97.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.95% 94.45%
CHEMBL1937 Q92769 Histone deacetylase 2 85.76% 94.75%
CHEMBL3359 P21462 Formyl peptide receptor 1 85.74% 93.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 85.24% 99.23%
CHEMBL2693 Q9UIQ6 Cystinyl aminopeptidase 85.04% 97.64%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 84.12% 96.90%
CHEMBL226 P30542 Adenosine A1 receptor 83.46% 95.93%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 82.47% 93.03%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 82.46% 92.88%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.11% 95.89%
CHEMBL3401 O75469 Pregnane X receptor 80.83% 94.73%
CHEMBL213 P08588 Beta-1 adrenergic receptor 80.19% 95.56%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 101788263
LOTUS LTS0043721
wikiData Q105382033