Rhodomycin A

Details

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Internal ID f2de8042-89cb-47c1-a933-d80764978fdf
Taxonomy Phenylpropanoids and polyketides > Anthracyclines
IUPAC Name (7S,9R,10R)-7,10-bis[[(2S,4S,5S,6S)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]oxy]-9-ethyl-4,6,9,11-tetrahydroxy-8,10-dihydro-7H-tetracene-5,12-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C36H48N2O12/c1-8-36(46)14-21(49-22-12-18(37(4)5)29(40)15(2)47-22)25-28(35(36)50-23-13-19(38(6)7)30(41)16(3)48-23)34(45)26-27(33(25)44)32(43)24-17(31(26)42)10-9-11-20(24)39/h9-11,15-16,18-19,21-23,29-30,35,39-41,44-46H,8,12-14H2,1-7H3/t15-,16-,18-,19-,21-,22-,23-,29+,30+,35+,36+/m0/s1
InChI Key NWPIUETWDSWOKV-ZUOHIMJMSA-N
Popularity 56 references in papers

Physical and Chemical Properties

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Molecular Formula C36H48N2O12
Molecular Weight 700.80 g/mol
Exact Mass 700.32072497 g/mol
Topological Polar Surface Area (TPSA) 199.00 Ų
XlogP 2.60
Atomic LogP (AlogP) 2.09
H-Bond Acceptor 14
H-Bond Donor 6
Rotatable Bonds 7

Synonyms

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Rhodomycin A [MI]
beta-Rhodomycin II
NSC-136044
UNII-6E9E3X300A
6E9E3X300A
23666-50-4
5,12-Naphthacenedione, 8-ethyl-7,8,9,10-tetrahydro-1,6,8,11-tetrahydroxy-7,10-bis((2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl)oxy)-, (7R,8R,10S)-
(7S,9R,10R)-7,10-bis[[(2S,4S,5S,6S)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]oxy]-9-ethyl-4,6,9,11-tetrahydroxy-8,10-dihydro-7H-tetracene-5,12-dione
.BETA.-RHODOMYCIN II
RHODOMYCIN II, .BETA.
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Rhodomycin A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8465 84.65%
Caco-2 - 0.8618 86.18%
Blood Brain Barrier - 0.9750 97.50%
Human oral bioavailability - 0.6286 62.86%
Subcellular localzation Mitochondria 0.4035 40.35%
OATP2B1 inhibitior - 0.8584 85.84%
OATP1B1 inhibitior + 0.9122 91.22%
OATP1B3 inhibitior + 0.9432 94.32%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.7000 70.00%
BSEP inhibitior + 0.7771 77.71%
P-glycoprotein inhibitior + 0.6926 69.26%
P-glycoprotein substrate + 0.8050 80.50%
CYP3A4 substrate + 0.6939 69.39%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7579 75.79%
CYP3A4 inhibition - 0.8953 89.53%
CYP2C9 inhibition - 0.8728 87.28%
CYP2C19 inhibition - 0.8798 87.98%
CYP2D6 inhibition - 0.8408 84.08%
CYP1A2 inhibition - 0.6333 63.33%
CYP2C8 inhibition - 0.7974 79.74%
CYP inhibitory promiscuity - 0.8866 88.66%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.5773 57.73%
Eye corrosion - 0.9890 98.90%
Eye irritation - 0.9080 90.80%
Skin irritation - 0.8054 80.54%
Skin corrosion - 0.9379 93.79%
Ames mutagenesis + 0.9536 95.36%
Human Ether-a-go-go-Related Gene inhibition - 0.5300 53.00%
Micronuclear + 0.6900 69.00%
Hepatotoxicity + 0.6625 66.25%
skin sensitisation - 0.8982 89.82%
Respiratory toxicity + 0.9222 92.22%
Reproductive toxicity + 0.9000 90.00%
Mitochondrial toxicity + 0.9500 95.00%
Nephrotoxicity - 0.7686 76.86%
Acute Oral Toxicity (c) II 0.4454 44.54%
Estrogen receptor binding + 0.8421 84.21%
Androgen receptor binding + 0.7438 74.38%
Thyroid receptor binding - 0.5000 50.00%
Glucocorticoid receptor binding + 0.7037 70.37%
Aromatase binding + 0.7465 74.65%
PPAR gamma + 0.7788 77.88%
Honey bee toxicity - 0.7458 74.58%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.5800 58.00%
Fish aquatic toxicity + 0.9214 92.14%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 99.04% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.12% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 97.32% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.07% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 95.50% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.64% 97.09%
CHEMBL4685 P14902 Indoleamine 2,3-dioxygenase 92.22% 96.38%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 92.04% 99.23%
CHEMBL226 P30542 Adenosine A1 receptor 91.47% 95.93%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.13% 86.33%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 89.97% 94.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 87.76% 95.89%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 87.15% 96.21%
CHEMBL3004 P33527 Multidrug resistance-associated protein 1 86.88% 96.37%
CHEMBL3401 O75469 Pregnane X receptor 86.88% 94.73%
CHEMBL2553 Q15418 Ribosomal protein S6 kinase alpha 1 86.13% 85.11%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 83.58% 93.03%
CHEMBL1994 P08235 Mineralocorticoid receptor 82.91% 100.00%
CHEMBL5678 P34947 G protein-coupled receptor kinase 5 82.39% 88.00%
CHEMBL4208 P20618 Proteasome component C5 81.80% 90.00%
CHEMBL2378 P30307 Dual specificity phosphatase Cdc25C 81.69% 96.67%
CHEMBL241 Q14432 Phosphodiesterase 3A 80.41% 92.94%
CHEMBL3492 P49721 Proteasome Macropain subunit 80.34% 90.24%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

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PubChem 9896436
LOTUS LTS0068770
wikiData Q27264690