Berbine, 2,3,9,10-tetramethoxy-, hydrochloride

Details

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Internal ID d0a24fc7-b63c-442a-b44b-7133b912d349
Taxonomy Alkaloids and derivatives > Protoberberine alkaloids and derivatives
IUPAC Name 2,3,9,10-tetramethoxy-5,6,7,8,13,13a-hexahydroisoquinolino[2,1-b]isoquinolin-7-ium chloride
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C21H25NO4.ClH/c1-23-18-6-5-13-9-17-15-11-20(25-3)19(24-2)10-14(15)7-8-22(17)12-16(13)21(18)26-4;/h5-6,10-11,17H,7-9,12H2,1-4H3;1H
InChI Key MGSZZQQRTPWMEI-UHFFFAOYSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C21H26ClNO4
Molecular Weight 391.90 g/mol
Exact Mass 391.1550360 g/mol
Topological Polar Surface Area (TPSA) 41.40 Ų
XlogP 0.00
Atomic LogP (AlogP) -1.04
H-Bond Acceptor 4
H-Bond Donor 1
Rotatable Bonds 4

Synonyms

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Tetrahydropalmaline chloride
BERBINE, 2,3,9,10-TETRAMETHOXY-, HYDROCHLORIDE
2506-20-9
2,3,9,10-tetramethoxy-5,6,7,8,13,13a-hexahydroisoquinolino[2,1-b]isoquinolin-7-ium;chloride
Tetrahydropalmatine hydrochloride, (+/-)-
hydron;2,3,9,10-tetramethoxy-6,8,13,13a-tetrahydro-5H-isoquinolino[2,1-b]isoquinoline;chloride
NSC 132057
NSC 209411
UNII-4AA8F911N9
Palmatine, tetrahydro-, hydrochloride, (+-)-
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Berbine, 2,3,9,10-tetramethoxy-, hydrochloride

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8509 85.09%
Caco-2 + 0.9145 91.45%
Blood Brain Barrier + 0.5750 57.50%
Human oral bioavailability - 0.5571 55.71%
Subcellular localzation Lysosomes 0.7189 71.89%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9427 94.27%
OATP1B3 inhibitior + 0.9392 93.92%
MATE1 inhibitior - 0.7000 70.00%
OCT2 inhibitior - 0.5000 50.00%
BSEP inhibitior + 0.6039 60.39%
P-glycoprotein inhibitior + 0.6925 69.25%
P-glycoprotein substrate + 0.5503 55.03%
CYP3A4 substrate + 0.5985 59.85%
CYP2C9 substrate + 0.7929 79.29%
CYP2D6 substrate + 0.4688 46.88%
CYP3A4 inhibition - 0.8047 80.47%
CYP2C9 inhibition - 0.8976 89.76%
CYP2C19 inhibition - 0.7315 73.15%
CYP2D6 inhibition - 0.6682 66.82%
CYP1A2 inhibition - 0.6489 64.89%
CYP2C8 inhibition + 0.6308 63.08%
CYP inhibitory promiscuity - 0.8701 87.01%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.8700 87.00%
Carcinogenicity (trinary) Non-required 0.6376 63.76%
Eye corrosion - 0.9829 98.29%
Eye irritation - 0.9719 97.19%
Skin irritation - 0.7341 73.41%
Skin corrosion - 0.9195 91.95%
Ames mutagenesis - 0.7100 71.00%
Human Ether-a-go-go-Related Gene inhibition + 0.9074 90.74%
Micronuclear - 0.5400 54.00%
Hepatotoxicity - 0.6697 66.97%
skin sensitisation - 0.8644 86.44%
Respiratory toxicity + 0.6889 68.89%
Reproductive toxicity + 0.8333 83.33%
Mitochondrial toxicity + 0.8500 85.00%
Nephrotoxicity - 0.8242 82.42%
Acute Oral Toxicity (c) III 0.4659 46.59%
Estrogen receptor binding + 0.6884 68.84%
Androgen receptor binding - 0.4813 48.13%
Thyroid receptor binding + 0.6218 62.18%
Glucocorticoid receptor binding + 0.5908 59.08%
Aromatase binding - 0.8005 80.05%
PPAR gamma - 0.6837 68.37%
Honey bee toxicity - 0.7680 76.80%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity + 0.6600 66.00%
Fish aquatic toxicity - 0.4442 44.42%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.64% 96.09%
CHEMBL241 Q14432 Phosphodiesterase 3A 92.47% 92.94%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 91.36% 91.11%
CHEMBL2535 P11166 Glucose transporter 90.73% 98.75%
CHEMBL2056 P21728 Dopamine D1 receptor 90.43% 91.00%
CHEMBL3192 Q9BY41 Histone deacetylase 8 89.55% 93.99%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.35% 86.33%
CHEMBL217 P14416 Dopamine D2 receptor 87.90% 95.62%
CHEMBL5747 Q92793 CREB-binding protein 86.04% 95.12%
CHEMBL4306 P22460 Voltage-gated potassium channel subunit Kv1.5 85.04% 94.03%
CHEMBL4681 P42330 Aldo-keto-reductase family 1 member C3 83.92% 89.05%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.85% 95.89%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 82.41% 92.62%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 81.39% 89.62%
CHEMBL4302 P08183 P-glycoprotein 1 81.13% 92.98%
CHEMBL4208 P20618 Proteasome component C5 80.93% 90.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.82% 99.17%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 80.18% 100.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 17265
NPASS NPC51957
ChEMBL CHEMBL1412574