(1R,2S,3'S,4R,4'S,5'S,6S,7S,8R,9R,12S,13R,14R,16R)-3',16-dihydroxy-14-[(2S,3R,4S,5S)-4-hydroxy-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy-5-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-5',7,9,13-tetramethyl-4'-[(2S,3R,4R,5R,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyspiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-ene-6,2'-oxane]-3-one

Details

Top
Internal ID b57b1ba9-3927-48df-85e5-0aab4f252856
Taxonomy Lipids and lipid-like molecules > Steroids and steroid derivatives > Steroidal glycosides > Steroidal saponins
IUPAC Name (1R,2S,3'S,4R,4'S,5'S,6S,7S,8R,9R,12S,13R,14R,16R)-3',16-dihydroxy-14-[(2S,3R,4S,5S)-4-hydroxy-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy-5-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-5',7,9,13-tetramethyl-4'-[(2S,3R,4R,5R,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyspiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-ene-6,2'-oxane]-3-one
SMILES (Canonical) CC1COC2(C(C3C(O2)C(=O)C4C3(CCC5C4CC=C6C5(C(CC(C6)O)OC7C(C(C(CO7)OC8C(C(C(CO8)O)O)O)O)OC9C(C(C(C(O9)C)O)O)O)C)C)C)C(C1OC1C(C(C(C(O1)C)O)O)O)O
SMILES (Isomeric) C[C@H]1CO[C@]2([C@H]([C@H]3[C@@H](O2)C(=O)[C@@H]4[C@@]3(CC[C@H]5[C@H]4CC=C6[C@@]5([C@@H](C[C@@H](C6)O)O[C@H]7[C@@H]([C@H]([C@H](CO7)O[C@H]8[C@@H]([C@H]([C@@H](CO8)O)O)O)O)O[C@H]9[C@@H]([C@@H]([C@H]([C@@H](O9)C)O)O)O)C)C)C)[C@H]([C@H]1O[C@H]1[C@@H]([C@@H]([C@H]([C@H](O1)C)O)O)O)O
InChI InChI=1S/C49H76O23/c1-16-13-65-49(42(62)39(16)70-44-37(60)34(57)29(52)18(3)66-44)17(2)27-40(72-49)33(56)28-22-8-7-20-11-21(50)12-26(48(20,6)23(22)9-10-47(27,28)5)69-46-41(71-45-38(61)35(58)30(53)19(4)67-45)32(55)25(15-64-46)68-43-36(59)31(54)24(51)14-63-43/h7,16-19,21-32,34-46,50-55,57-62H,8-15H2,1-6H3/t16-,17-,18+,19-,21+,22+,23-,24+,25-,26+,27-,28+,29-,30-,31-,32-,34+,35+,36+,37+,38+,39-,40+,41+,42-,43-,44-,45-,46-,47+,48-,49-/m0/s1
InChI Key OPVGLMPKAMCKKA-DZIVOQIISA-N
Popularity 1 reference in papers

Physical and Chemical Properties

Top
Molecular Formula C49H76O23
Molecular Weight 1033.10 g/mol
Exact Mass 1032.47773867 g/mol
Topological Polar Surface Area (TPSA) 352.00 Ų
XlogP -3.30
Atomic LogP (AlogP) -3.56
H-Bond Acceptor 23
H-Bond Donor 12
Rotatable Bonds 8

Synonyms

Top
There are no found synonyms.

2D Structure

Top
2D Structure of (1R,2S,3'S,4R,4'S,5'S,6S,7S,8R,9R,12S,13R,14R,16R)-3',16-dihydroxy-14-[(2S,3R,4S,5S)-4-hydroxy-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy-5-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-5',7,9,13-tetramethyl-4'-[(2S,3R,4R,5R,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyspiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-ene-6,2'-oxane]-3-one

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8860 88.60%
Caco-2 - 0.8866 88.66%
Blood Brain Barrier - 0.8750 87.50%
Human oral bioavailability - 0.6857 68.57%
Subcellular localzation Mitochondria 0.8262 82.62%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8375 83.75%
OATP1B3 inhibitior + 0.9256 92.56%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.7250 72.50%
BSEP inhibitior + 0.9102 91.02%
P-glycoprotein inhibitior + 0.7424 74.24%
P-glycoprotein substrate + 0.6947 69.47%
CYP3A4 substrate + 0.7750 77.50%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8480 84.80%
CYP3A4 inhibition - 0.9535 95.35%
CYP2C9 inhibition - 0.9285 92.85%
CYP2C19 inhibition - 0.9372 93.72%
CYP2D6 inhibition - 0.9326 93.26%
CYP1A2 inhibition - 0.9123 91.23%
CYP2C8 inhibition + 0.7648 76.48%
CYP inhibitory promiscuity - 0.9617 96.17%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.4958 49.58%
Eye corrosion - 0.9895 98.95%
Eye irritation - 0.9069 90.69%
Skin irritation + 0.5296 52.96%
Skin corrosion - 0.9372 93.72%
Ames mutagenesis - 0.6500 65.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7509 75.09%
Micronuclear - 0.8500 85.00%
Hepatotoxicity - 0.5320 53.20%
skin sensitisation - 0.9031 90.31%
Respiratory toxicity + 0.8444 84.44%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.5875 58.75%
Nephrotoxicity - 0.7181 71.81%
Acute Oral Toxicity (c) I 0.4553 45.53%
Estrogen receptor binding + 0.8425 84.25%
Androgen receptor binding + 0.7517 75.17%
Thyroid receptor binding - 0.4906 49.06%
Glucocorticoid receptor binding + 0.7447 74.47%
Aromatase binding + 0.6195 61.95%
PPAR gamma + 0.8013 80.13%
Honey bee toxicity - 0.5355 53.55%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity + 0.6500 65.00%
Fish aquatic toxicity + 0.9652 96.52%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.90% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.59% 96.09%
CHEMBL2581 P07339 Cathepsin D 96.50% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 96.29% 86.33%
CHEMBL226 P30542 Adenosine A1 receptor 95.11% 95.93%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.89% 89.00%
CHEMBL221 P23219 Cyclooxygenase-1 93.63% 90.17%
CHEMBL1994 P08235 Mineralocorticoid receptor 93.03% 100.00%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 92.08% 95.89%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.18% 95.56%
CHEMBL1937 Q92769 Histone deacetylase 2 91.10% 94.75%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.04% 97.09%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.60% 94.00%
CHEMBL1871 P10275 Androgen Receptor 88.68% 96.43%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 87.23% 97.33%
CHEMBL3714130 P46095 G-protein coupled receptor 6 87.00% 97.36%
CHEMBL3351 Q13085 Acetyl-CoA carboxylase 1 85.18% 93.04%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 84.56% 97.14%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 83.36% 91.07%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.03% 95.89%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 81.61% 92.62%
CHEMBL5103 Q969S8 Histone deacetylase 10 81.27% 90.08%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 80.97% 99.23%
CHEMBL3401 O75469 Pregnane X receptor 80.74% 94.73%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Ornithogalum thyrsoides

Cross-Links

Top
PubChem 162801006
LOTUS LTS0145796
wikiData Q105196582