Apodine

Details

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Internal ID bed6f303-1849-439c-8a18-3ff6f42bee01
Taxonomy Alkaloids and derivatives > Aspidospermatan-type alkaloids
IUPAC Name methyl (1R,12R,16S,22R)-14-oxo-15-oxa-8,19-diazahexacyclo[10.9.1.01,9.02,7.012,16.019,22]docosa-2,4,6,9-tetraene-10-carboxylate
SMILES (Canonical) COC(=O)C1=C2C3(CCN4C3C5(C1)CC(=O)OC5CC4)C6=CC=CC=C6N2
SMILES (Isomeric) COC(=O)C1=C2[C@]3(CCN4[C@H]3[C@@]5(C1)CC(=O)O[C@H]5CC4)C6=CC=CC=C6N2
InChI InChI=1S/C21H22N2O4/c1-26-18(25)12-10-20-11-16(24)27-15(20)6-8-23-9-7-21(19(20)23)13-4-2-3-5-14(13)22-17(12)21/h2-5,15,19,22H,6-11H2,1H3/t15-,19-,20-,21-/m0/s1
InChI Key SXLKMYFJLWDXFU-ZEWNOJEFSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C21H22N2O4
Molecular Weight 366.40 g/mol
Exact Mass 366.15795719 g/mol
Topological Polar Surface Area (TPSA) 67.90 Ų
XlogP 1.90
Atomic LogP (AlogP) 1.96
H-Bond Acceptor 6
H-Bond Donor 1
Rotatable Bonds 1

Synonyms

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57932-86-2
methyl (1R,12R,16S,22R)-14-oxo-15-oxa-8,19-diazahexacyclo[10.9.1.01,9.02,7.012,16.019,22]docosa-2,4,6,9-tetraene-10-carboxylate
C09034
CHEBI:2783
DTXSID60331701
Q27105815

2D Structure

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2D Structure of Apodine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9520 95.20%
Caco-2 + 0.6024 60.24%
Blood Brain Barrier + 0.7500 75.00%
Human oral bioavailability - 0.5000 50.00%
Subcellular localzation Mitochondria 0.7059 70.59%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8813 88.13%
OATP1B3 inhibitior + 0.9294 92.94%
MATE1 inhibitior - 0.7000 70.00%
OCT2 inhibitior - 0.6000 60.00%
BSEP inhibitior + 0.7932 79.32%
P-glycoprotein inhibitior - 0.6423 64.23%
P-glycoprotein substrate + 0.6216 62.16%
CYP3A4 substrate + 0.7057 70.57%
CYP2C9 substrate - 0.5895 58.95%
CYP2D6 substrate - 0.8013 80.13%
CYP3A4 inhibition - 0.6837 68.37%
CYP2C9 inhibition - 0.7244 72.44%
CYP2C19 inhibition - 0.8131 81.31%
CYP2D6 inhibition - 0.7427 74.27%
CYP1A2 inhibition - 0.6256 62.56%
CYP2C8 inhibition + 0.4435 44.35%
CYP inhibitory promiscuity - 0.7598 75.98%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.4889 48.89%
Eye corrosion - 0.9850 98.50%
Eye irritation - 0.9953 99.53%
Skin irritation - 0.7751 77.51%
Skin corrosion - 0.9298 92.98%
Ames mutagenesis - 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6877 68.77%
Micronuclear + 0.6600 66.00%
Hepatotoxicity + 0.6607 66.07%
skin sensitisation - 0.8396 83.96%
Respiratory toxicity + 0.8444 84.44%
Reproductive toxicity + 0.9333 93.33%
Mitochondrial toxicity + 0.9125 91.25%
Nephrotoxicity + 0.6607 66.07%
Acute Oral Toxicity (c) III 0.5610 56.10%
Estrogen receptor binding + 0.5997 59.97%
Androgen receptor binding + 0.6764 67.64%
Thyroid receptor binding - 0.6126 61.26%
Glucocorticoid receptor binding + 0.6235 62.35%
Aromatase binding + 0.5293 52.93%
PPAR gamma - 0.5000 50.00%
Honey bee toxicity - 0.8979 89.79%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity + 0.6400 64.00%
Fish aquatic toxicity + 0.9340 93.40%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.67% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.65% 96.09%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 94.17% 85.14%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 91.75% 99.23%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 90.00% 93.03%
CHEMBL4208 P20618 Proteasome component C5 89.69% 90.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.13% 97.09%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 87.86% 91.07%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 87.08% 97.14%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.30% 86.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.92% 95.89%
CHEMBL2581 P07339 Cathepsin D 83.69% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.62% 95.56%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 83.60% 82.69%
CHEMBL5028 O14672 ADAM10 82.01% 97.50%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 80.63% 94.00%
CHEMBL2095172 P14867 GABA-A receptor; alpha-1/beta-2/gamma-2 80.50% 92.67%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Tabernaemontana cymosa
Tabernaemontana vanheurckii

Cross-Links

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PubChem 441984
LOTUS LTS0198709
wikiData Q27105815