Antibiotic A-40926 B0

Details

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Internal ID 8874cae1-7101-4329-b3c3-5aa5360185d1
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Peptides > Oligopeptides
IUPAC Name (1S,2R,19R,22R,34S,37R,40R,52S)-64-[(2S,3R,4R,5S,6S)-6-carboxy-4,5-dihydroxy-3-(10-methylundecanoylamino)oxan-2-yl]oxy-5,32-dichloro-2,26,31,44,49-pentahydroxy-22-(methylamino)-21,35,38,54,56,59-hexaoxo-47-[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-7,13,28-trioxa-20,36,39,53,55,58-hexazaundecacyclo[38.14.2.23,6.214,17.219,34.18,12.123,27.129,33.141,45.010,37.046,51]hexahexaconta-3,5,8,10,12(64),14(63),15,17(62),23(61),24,26,29(60),30,32,41(57),42,44,46(51),47,49,65-henicosaene-52-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C83H88Cl2N8O29/c1-33(2)10-8-6-4-5-7-9-11-56(99)88-65-68(102)70(104)73(81(114)115)122-82(65)121-72-53-26-38-27-54(72)118-50-21-16-37(24-45(50)84)66(100)64-79(111)92-63(80(112)113)43-28-39(95)29-52(119-83-71(105)69(103)67(101)55(32-94)120-83)57(43)42-23-35(14-19-47(42)96)60(76(108)93-64)89-77(109)61(38)90-78(110)62-44-30-41(31-49(98)58(44)85)117-51-25-36(15-20-48(51)97)59(86-3)75(107)87-46(74(106)91-62)22-34-12-17-40(116-53)18-13-34/h12-21,23-31,33,46,55,59-71,73,82-83,86,94-98,100-105H,4-11,22,32H2,1-3H3,(H,87,107)(H,88,99)(H,89,109)(H,90,110)(H,91,106)(H,92,111)(H,93,108)(H,112,113)(H,114,115)/t46-,55-,59-,60-,61-,62+,63+,64+,65-,66-,67-,68-,69+,70+,71+,73+,82-,83+/m1/s1
InChI Key PZMMGNLKWHJGSE-PSDJNXLUSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C83H88Cl2N8O29
Molecular Weight 1732.50 g/mol
Exact Mass 1730.5034242 g/mol
Topological Polar Surface Area (TPSA) 577.00 Ų
XlogP 3.70
Atomic LogP (AlogP) 4.18
H-Bond Acceptor 28
H-Bond Donor 21
Rotatable Bonds 18

Synonyms

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MBP3L2793V
Parvodicin C1
110882-84-3
Dalbavancin Impurity
UNII-MBP3L2793V
Ristomycin A aglycone, 5,31-dichloro-7-demethyl-64-O-demethyl-19-deoxy-56-O-(2-deoxy-2-((10-methyl-1-oxoundecyl)amino)-beta-D-glucopyranuronosyl)-42-o-alpha-D-mannopyranosyl-N15-methyl-
A-40926 B
Q27283821
RISTOMYCIN A AGLYCONE, 5,31-DICHLORO-7-DEMETHYL-64-O-DEMETHYL-19-DEOXY-56-O-(2-DEOXY-2-((10-METHYL-1-OXOUNDECYL)AMINO)-.BETA.-D-GLUCOPYRANURONOSYL)-42-O-.ALPHA.-D-MANNOPYRANOSYL-N15-METHYL-

2D Structure

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2D Structure of Antibiotic A-40926 B0

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6670 66.70%
Caco-2 - 0.8587 85.87%
Blood Brain Barrier - 0.8750 87.50%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Nucleus 0.4853 48.53%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8168 81.68%
OATP1B3 inhibitior + 0.9122 91.22%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior + 0.9735 97.35%
P-glycoprotein inhibitior + 0.7419 74.19%
P-glycoprotein substrate + 0.8292 82.92%
CYP3A4 substrate + 0.7600 76.00%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8402 84.02%
CYP3A4 inhibition - 0.5375 53.75%
CYP2C9 inhibition - 0.8475 84.75%
CYP2C19 inhibition - 0.8071 80.71%
CYP2D6 inhibition - 0.8782 87.82%
CYP1A2 inhibition - 0.8682 86.82%
CYP2C8 inhibition + 0.8751 87.51%
CYP inhibitory promiscuity - 0.7764 77.64%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.7300 73.00%
Carcinogenicity (trinary) Non-required 0.5620 56.20%
Eye corrosion - 0.9861 98.61%
Eye irritation - 0.8956 89.56%
Skin irritation - 0.7687 76.87%
Skin corrosion - 0.9324 93.24%
Ames mutagenesis - 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7553 75.53%
Micronuclear + 0.7900 79.00%
Hepatotoxicity + 0.5626 56.26%
skin sensitisation - 0.8641 86.41%
Respiratory toxicity + 0.7222 72.22%
Reproductive toxicity + 0.9333 93.33%
Mitochondrial toxicity + 0.9000 90.00%
Nephrotoxicity + 0.5648 56.48%
Acute Oral Toxicity (c) III 0.6456 64.56%
Estrogen receptor binding + 0.5821 58.21%
Androgen receptor binding + 0.7564 75.64%
Thyroid receptor binding + 0.8023 80.23%
Glucocorticoid receptor binding + 0.7937 79.37%
Aromatase binding + 0.7366 73.66%
PPAR gamma + 0.7979 79.79%
Honey bee toxicity - 0.6144 61.44%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.5347 53.47%
Fish aquatic toxicity + 0.9489 94.89%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL220 P22303 Acetylcholinesterase 99.96% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.93% 91.11%
CHEMBL2581 P07339 Cathepsin D 99.88% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 99.02% 99.17%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 99.00% 94.45%
CHEMBL2179 P04062 Beta-glucocerebrosidase 97.82% 85.31%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.73% 96.09%
CHEMBL5852 Q96P65 Pyroglutamylated RFamide peptide receptor 96.04% 85.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 95.75% 99.15%
CHEMBL3401 O75469 Pregnane X receptor 95.60% 94.73%
CHEMBL1806 P11388 DNA topoisomerase II alpha 94.74% 89.00%
CHEMBL3359 P21462 Formyl peptide receptor 1 94.18% 93.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.87% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.56% 95.56%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 91.90% 90.71%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 91.53% 96.21%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 90.92% 89.62%
CHEMBL2535 P11166 Glucose transporter 90.35% 98.75%
CHEMBL2413 P32246 C-C chemokine receptor type 1 87.97% 89.50%
CHEMBL5608 Q16288 NT-3 growth factor receptor 87.53% 95.89%
CHEMBL3976 Q9UHL4 Dipeptidyl peptidase II 87.37% 92.29%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 87.19% 96.90%
CHEMBL2716 Q8WUI4 Histone deacetylase 7 85.90% 89.44%
CHEMBL236 P41143 Delta opioid receptor 85.41% 99.35%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 85.00% 96.47%
CHEMBL2563 Q9UQL6 Histone deacetylase 5 84.45% 89.67%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.75% 86.33%
CHEMBL3267 P48736 PI3-kinase p110-gamma subunit 83.44% 95.71%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 83.34% 100.00%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 83.33% 96.00%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 82.25% 95.50%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 82.22% 86.92%
CHEMBL237 P41145 Kappa opioid receptor 81.69% 98.10%
CHEMBL5255 O00206 Toll-like receptor 4 81.32% 92.50%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 81.24% 96.95%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 81.18% 92.88%
CHEMBL4208 P20618 Proteasome component C5 80.91% 90.00%
CHEMBL5103 Q969S8 Histone deacetylase 10 80.10% 90.08%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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Cross-Links

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PubChem 17748695
LOTUS LTS0172650
wikiData Q27283821