Antibiotic 128

Details

Top
Internal ID c213007c-efca-40fb-bbbf-bc308185b8f7
Taxonomy Organic acids and derivatives > Peptidomimetics > Depsipeptides > Cyclic depsipeptides
IUPAC Name 2-amino-4-[[1-[[(9Z)-13,32-dihydroxy-24-(1-hydroxyethyl)-3-(1-hydroxy-2-methylpropyl)-6-[1-(1H-indol-3-yl)ethyl]-9-(1H-indol-3-ylmethylidene)-21,28-dimethyl-2,5,8,11,17,20,23,26,30-nonaoxo-29-oxa-1,4,7,10,16,19,22,25-octazatricyclo[29.3.0.012,16]tetratriacontan-27-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-4-oxobutanoic acid
SMILES (Canonical) CC1C(C(=O)NC(C(=O)NC(C(=O)NCC(=O)N2CCC(C2C(=O)NC(=CC3=CNC4=CC=CC=C43)C(=O)NC(C(=O)NC(C(=O)N5CCC(C5C(=O)O1)O)C(C(C)C)O)C(C)C6=CNC7=CC=CC=C76)O)C)C(C)O)NC(=O)C(CO)NC(=O)CC(C(=O)O)N
SMILES (Isomeric) CC1C(C(=O)NC(C(=O)NC(C(=O)NCC(=O)N2CCC(C2C(=O)N/C(=C\C3=CNC4=CC=CC=C43)/C(=O)NC(C(=O)NC(C(=O)N5CCC(C5C(=O)O1)O)C(C(C)C)O)C(C)C6=CNC7=CC=CC=C76)O)C)C(C)O)NC(=O)C(CO)NC(=O)CC(C(=O)O)N
InChI InChI=1S/C59H77N13O19/c1-25(2)49(79)46-57(87)72-18-16-40(76)48(72)59(90)91-29(6)45(69-52(82)38(24-73)65-41(77)20-34(60)58(88)89)55(85)68-44(28(5)74)54(84)64-27(4)50(80)63-23-42(78)71-17-15-39(75)47(71)56(86)66-37(19-30-21-61-35-13-9-7-11-31(30)35)51(81)67-43(53(83)70-46)26(3)33-22-62-36-14-10-8-12-32(33)36/h7-14,19,21-22,25-29,34,38-40,43-49,61-62,73-76,79H,15-18,20,23-24,60H2,1-6H3,(H,63,80)(H,64,84)(H,65,77)(H,66,86)(H,67,81)(H,68,85)(H,69,82)(H,70,83)(H,88,89)/b37-19-
InChI Key FJEKCPBQVANMTA-KOKCXWAISA-N
Popularity 2 references in papers

Physical and Chemical Properties

Top
Molecular Formula C59H77N13O19
Molecular Weight 1272.30 g/mol
Exact Mass 1271.54586728 g/mol
Topological Polar Surface Area (TPSA) 496.00 Ų
XlogP -3.70
Atomic LogP (AlogP) -4.98
H-Bond Acceptor 19
H-Bond Donor 17
Rotatable Bonds 13

Synonyms

Top
19246-24-3
2-amino-4-[[1-[[(9Z)-13,32-dihydroxy-24-(1-hydroxyethyl)-3-(1-hydroxy-2-methylpropyl)-6-[1-(1H-indol-3-yl)ethyl]-9-(1H-indol-3-ylmethylidene)-21,28-dimethyl-2,5,8,11,17,20,23,26,30-nonaoxo-29-oxa-1,4,7,10,16,19,22,25-octazatricyclo[29.3.0.012,16]tetratriacontan-27-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-4-oxobutanoic acid
NSC-235069
L-Proline,.beta.-didehydro-L-tryptophyl-cis-3-hydroxy-, .beta.1-lactone
18H-Dipyrrolo[2,1'-o][1,4,7,10,13,16,19,22,25]oxaoctaazacyclooctacosine

2D Structure

Top
2D Structure of Antibiotic 128

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7164 71.64%
Caco-2 - 0.8667 86.67%
Blood Brain Barrier - 0.9250 92.50%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Mitochondria 0.4744 47.44%
OATP2B1 inhibitior - 0.8595 85.95%
OATP1B1 inhibitior + 0.8207 82.07%
OATP1B3 inhibitior + 0.9260 92.60%
MATE1 inhibitior - 0.7694 76.94%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.9741 97.41%
P-glycoprotein inhibitior + 0.7428 74.28%
P-glycoprotein substrate + 0.8581 85.81%
CYP3A4 substrate + 0.7490 74.90%
CYP2C9 substrate - 0.8078 80.78%
CYP2D6 substrate - 0.8308 83.08%
CYP3A4 inhibition - 0.5863 58.63%
CYP2C9 inhibition - 0.8810 88.10%
CYP2C19 inhibition - 0.8664 86.64%
CYP2D6 inhibition - 0.9169 91.69%
CYP1A2 inhibition - 0.8946 89.46%
CYP2C8 inhibition + 0.7979 79.79%
CYP inhibitory promiscuity - 0.7967 79.67%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9000 90.00%
Carcinogenicity (trinary) Non-required 0.4904 49.04%
Eye corrosion - 0.9875 98.75%
Eye irritation - 0.8967 89.67%
Skin irritation - 0.7763 77.63%
Skin corrosion - 0.9288 92.88%
Ames mutagenesis - 0.6254 62.54%
Human Ether-a-go-go-Related Gene inhibition + 0.7249 72.49%
Micronuclear + 0.8500 85.00%
Hepatotoxicity - 0.6696 66.96%
skin sensitisation - 0.8689 86.89%
Respiratory toxicity + 0.8778 87.78%
Reproductive toxicity + 0.9667 96.67%
Mitochondrial toxicity + 0.9250 92.50%
Nephrotoxicity - 0.5726 57.26%
Acute Oral Toxicity (c) III 0.5842 58.42%
Estrogen receptor binding + 0.6448 64.48%
Androgen receptor binding + 0.7555 75.55%
Thyroid receptor binding + 0.7220 72.20%
Glucocorticoid receptor binding + 0.7637 76.37%
Aromatase binding + 0.7257 72.57%
PPAR gamma + 0.7880 78.80%
Honey bee toxicity - 0.6403 64.03%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.5900 59.00%
Fish aquatic toxicity + 0.8848 88.48%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.85% 91.11%
CHEMBL2581 P07339 Cathepsin D 99.33% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.56% 96.09%
CHEMBL2107 P61073 C-X-C chemokine receptor type 4 97.99% 93.10%
CHEMBL1806 P11388 DNA topoisomerase II alpha 97.91% 89.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 97.67% 95.56%
CHEMBL333 P08253 Matrix metalloproteinase-2 97.31% 96.31%
CHEMBL226 P30542 Adenosine A1 receptor 94.96% 95.93%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 94.88% 85.14%
CHEMBL221 P23219 Cyclooxygenase-1 94.80% 90.17%
CHEMBL5103 Q969S8 Histone deacetylase 10 92.07% 90.08%
CHEMBL1255126 O15151 Protein Mdm4 91.48% 90.20%
CHEMBL3384 Q16512 Protein kinase N1 90.73% 80.71%
CHEMBL3830 Q2M2I8 Adaptor-associated kinase 90.09% 83.10%
CHEMBL2094135 Q96BI3 Gamma-secretase 90.04% 98.05%
CHEMBL3310 Q96DB2 Histone deacetylase 11 90.01% 88.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 88.09% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.01% 97.09%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 87.98% 99.23%
CHEMBL4588 P22894 Matrix metalloproteinase 8 87.95% 94.66%
CHEMBL5608 Q16288 NT-3 growth factor receptor 87.17% 95.89%
CHEMBL4051 P13569 Cystic fibrosis transmembrane conductance regulator 86.68% 95.71%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 86.53% 95.83%
CHEMBL2492 P36544 Neuronal acetylcholine receptor protein alpha-7 subunit 86.42% 88.42%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 86.38% 97.14%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 85.49% 96.90%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 84.98% 100.00%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 84.89% 93.03%
CHEMBL5028 O14672 ADAM10 84.43% 97.50%
CHEMBL1795139 Q8IU80 Transmembrane protease serine 6 83.88% 98.33%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 83.09% 96.47%
CHEMBL321 P14780 Matrix metalloproteinase 9 82.82% 92.12%
CHEMBL1937 Q92769 Histone deacetylase 2 81.78% 94.75%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.31% 99.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.26% 86.33%
CHEMBL3155 P34969 Serotonin 7 (5-HT7) receptor 80.22% 90.71%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 5476484
LOTUS LTS0150338
wikiData Q105105136