Ambactin

Details

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Internal ID a3118d5d-b6bf-42ba-805c-8890df08024f
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Peptides > Cyclic peptides
IUPAC Name 3-[(2S,5R,8S,11R,14S,17R)-14-(4-aminobutyl)-5,11-dibenzyl-17-(hydroxymethyl)-8-(2-methylpropyl)-3,6,9,12,15,18-hexaoxo-1,4,7,10,13,16-hexazacyclooctadec-2-yl]propanamide
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C38H54N8O8/c1-23(2)19-28-35(51)45-29(20-24-11-5-3-6-12-24)36(52)41-26(15-9-10-18-39)33(49)46-31(22-47)38(54)42-27(16-17-32(40)48)34(50)44-30(37(53)43-28)21-25-13-7-4-8-14-25/h3-8,11-14,23,26-31,47H,9-10,15-22,39H2,1-2H3,(H2,40,48)(H,41,52)(H,42,54)(H,43,53)(H,44,50)(H,45,51)(H,46,49)/t26-,27-,28-,29+,30+,31+/m0/s1
InChI Key HMXRHVCZYGEXRQ-JYMVZIKVSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C38H54N8O8
Molecular Weight 750.90 g/mol
Exact Mass 750.40646071 g/mol
Topological Polar Surface Area (TPSA) 264.00 Ų
XlogP 1.10
Atomic LogP (AlogP) -1.17
H-Bond Acceptor 9
H-Bond Donor 9
Rotatable Bonds 14

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of Ambactin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7972 79.72%
Caco-2 - 0.8961 89.61%
Blood Brain Barrier - 0.8000 80.00%
Human oral bioavailability + 0.5286 52.86%
Subcellular localzation Mitochondria 0.6131 61.31%
OATP2B1 inhibitior + 0.5598 55.98%
OATP1B1 inhibitior + 0.9068 90.68%
OATP1B3 inhibitior + 0.9391 93.91%
MATE1 inhibitior - 0.9212 92.12%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior + 0.7198 71.98%
P-glycoprotein inhibitior + 0.7651 76.51%
P-glycoprotein substrate + 0.7719 77.19%
CYP3A4 substrate + 0.5386 53.86%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7755 77.55%
CYP3A4 inhibition - 0.8920 89.20%
CYP2C9 inhibition - 0.9514 95.14%
CYP2C19 inhibition - 0.9047 90.47%
CYP2D6 inhibition - 0.9096 90.96%
CYP1A2 inhibition - 0.9401 94.01%
CYP2C8 inhibition - 0.7702 77.02%
CYP inhibitory promiscuity - 0.9886 98.86%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.7900 79.00%
Carcinogenicity (trinary) Non-required 0.6704 67.04%
Eye corrosion - 0.9898 98.98%
Eye irritation - 0.9227 92.27%
Skin irritation - 0.8018 80.18%
Skin corrosion - 0.9404 94.04%
Ames mutagenesis - 0.7400 74.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6817 68.17%
Micronuclear + 0.7400 74.00%
Hepatotoxicity - 0.5000 50.00%
skin sensitisation - 0.8987 89.87%
Respiratory toxicity + 0.8000 80.00%
Reproductive toxicity + 0.9151 91.51%
Mitochondrial toxicity + 0.8125 81.25%
Nephrotoxicity - 0.6598 65.98%
Acute Oral Toxicity (c) III 0.7219 72.19%
Estrogen receptor binding + 0.7498 74.98%
Androgen receptor binding + 0.6958 69.58%
Thyroid receptor binding + 0.5499 54.99%
Glucocorticoid receptor binding + 0.6197 61.97%
Aromatase binding + 0.5440 54.40%
PPAR gamma + 0.7239 72.39%
Honey bee toxicity - 0.9238 92.38%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.6000 60.00%
Fish aquatic toxicity - 0.5137 51.37%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 98.89% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.79% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.10% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.06% 95.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.54% 94.45%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 90.13% 96.47%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.88% 99.17%
CHEMBL221 P23219 Cyclooxygenase-1 89.57% 90.17%
CHEMBL4040 P28482 MAP kinase ERK2 88.49% 83.82%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 87.87% 95.50%
CHEMBL2072 P35499 Sodium channel protein type IV alpha subunit 87.82% 92.32%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 87.60% 82.69%
CHEMBL253 P34972 Cannabinoid CB2 receptor 84.53% 97.25%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.84% 97.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.34% 86.33%
CHEMBL1255126 O15151 Protein Mdm4 83.14% 90.20%
CHEMBL1907594 P30926 Neuronal acetylcholine receptor; alpha3/beta4 83.08% 97.23%
CHEMBL2693 Q9UIQ6 Cystinyl aminopeptidase 82.42% 97.64%
CHEMBL4581 P52732 Kinesin-like protein 1 82.13% 93.18%
CHEMBL2327 P21452 Neurokinin 2 receptor 81.66% 98.89%
CHEMBL4227 P25090 Lipoxin A4 receptor 80.71% 100.00%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 80.56% 93.00%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 80.52% 97.29%
CHEMBL3492 P49721 Proteasome Macropain subunit 80.13% 90.24%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 139583382
LOTUS LTS0174140
wikiData Q75059788