Amaronitidin

Details

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Internal ID 819605dd-f251-4da9-8150-c1a722dfb290
Taxonomy Benzenoids > Benzene and substituted derivatives > Biphenyls and derivatives
IUPAC Name (3S,4R)-3-[(2S,3R,4S,5S,6R)-3-[2,4-dihydroxy-6-(3-hydroxyphenyl)phenoxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-4-ethenyl-4,6-dihydro-3H-pyrano[3,4-c]pyran-8-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C28H28O12/c1-2-16-17-6-7-36-26(35)19(17)12-37-27(16)40-28-25(23(34)22(33)21(11-29)38-28)39-24-18(9-15(31)10-20(24)32)13-4-3-5-14(30)8-13/h2-6,8-10,12,16,21-23,25,27-34H,1,7,11H2/t16-,21-,22-,23+,25-,27+,28+/m1/s1
InChI Key JWYPWDPAILSKLF-RHTWYDRRSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C28H28O12
Molecular Weight 556.50 g/mol
Exact Mass 556.15807632 g/mol
Topological Polar Surface Area (TPSA) 185.00 Ų
XlogP 1.70
Atomic LogP (AlogP) 1.20
H-Bond Acceptor 12
H-Bond Donor 6
Rotatable Bonds 7

Synonyms

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RefChem:915635
(3S,4R)-3-((2S,3R,4S,5S,6R)-3-(2,4-dihydroxy-6-(3-hydroxyphenyl)phenoxy)-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl)oxy-4-ethenyl-4,6-dihydro-3H-pyrano(3,4-c)pyran-8-one

2D Structure

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2D Structure of Amaronitidin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6786 67.86%
Caco-2 - 0.9025 90.25%
Blood Brain Barrier - 0.7250 72.50%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.6507 65.07%
OATP2B1 inhibitior - 0.8405 84.05%
OATP1B1 inhibitior + 0.8358 83.58%
OATP1B3 inhibitior + 0.9476 94.76%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.7607 76.07%
P-glycoprotein inhibitior - 0.4427 44.27%
P-glycoprotein substrate - 0.5801 58.01%
CYP3A4 substrate + 0.6723 67.23%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8497 84.97%
CYP3A4 inhibition - 0.8947 89.47%
CYP2C9 inhibition - 0.7759 77.59%
CYP2C19 inhibition - 0.7175 71.75%
CYP2D6 inhibition - 0.8686 86.86%
CYP1A2 inhibition - 0.8273 82.73%
CYP2C8 inhibition + 0.6950 69.50%
CYP inhibitory promiscuity - 0.5677 56.77%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.7131 71.31%
Eye corrosion - 0.9879 98.79%
Eye irritation - 0.8737 87.37%
Skin irritation - 0.7909 79.09%
Skin corrosion - 0.9467 94.67%
Ames mutagenesis + 0.5900 59.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6572 65.72%
Micronuclear + 0.6133 61.33%
Hepatotoxicity - 0.5101 51.01%
skin sensitisation - 0.8104 81.04%
Respiratory toxicity + 0.6222 62.22%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity - 0.5000 50.00%
Nephrotoxicity - 0.7948 79.48%
Acute Oral Toxicity (c) III 0.4175 41.75%
Estrogen receptor binding + 0.7505 75.05%
Androgen receptor binding + 0.7015 70.15%
Thyroid receptor binding + 0.5531 55.31%
Glucocorticoid receptor binding + 0.6281 62.81%
Aromatase binding + 0.5887 58.87%
PPAR gamma + 0.7520 75.20%
Honey bee toxicity - 0.6616 66.16%
Biodegradation - 0.6750 67.50%
Crustacea aquatic toxicity - 0.5500 55.00%
Fish aquatic toxicity + 0.9703 97.03%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.37% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 99.01% 91.49%
CHEMBL2581 P07339 Cathepsin D 98.55% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 95.64% 89.00%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 94.92% 83.57%
CHEMBL1293249 Q13887 Kruppel-like factor 5 94.23% 86.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.60% 97.09%
CHEMBL226 P30542 Adenosine A1 receptor 92.51% 95.93%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.87% 95.56%
CHEMBL3060 Q9Y345 Glycine transporter 2 90.40% 99.17%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.05% 96.09%
CHEMBL220 P22303 Acetylcholinesterase 88.34% 94.45%
CHEMBL1966 Q02127 Dihydroorotate dehydrogenase 87.61% 96.09%
CHEMBL3401 O75469 Pregnane X receptor 86.35% 94.73%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.15% 100.00%
CHEMBL4208 P20618 Proteasome component C5 85.63% 90.00%
CHEMBL2083 P15090 Fatty acid binding protein adipocyte 83.64% 95.71%
CHEMBL4530 P00488 Coagulation factor XIII 83.48% 96.00%
CHEMBL340 P08684 Cytochrome P450 3A4 81.60% 91.19%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 80.86% 96.21%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 80.08% 92.88%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Gentianella nitida

Cross-Links

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PubChem 101720810
LOTUS LTS0029423
wikiData Q105136461