(5R,8R)-3-[(1S,2R,3R,5R,6R,9S,14S,15R,18R,19R)-3-hydroxy-2,6,14-trimethyl-9-phenyl-8-oxahexacyclo[16.3.1.01,18.02,15.05,14.06,11]docos-11-en-19-yl]-8-methoxy-8-methyl-1,6-dioxaspiro[4.4]non-3-en-2-one

Details

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Internal ID 6463b2d0-e6ec-429b-8c98-2a8245250201
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids > Limonoids
IUPAC Name (5R,8R)-3-[(1S,2R,3R,5R,6R,9S,14S,15R,18R,19R)-3-hydroxy-2,6,14-trimethyl-9-phenyl-8-oxahexacyclo[16.3.1.01,18.02,15.05,14.06,11]docos-11-en-19-yl]-8-methoxy-8-methyl-1,6-dioxaspiro[4.4]non-3-en-2-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C39H50O6/c1-33(42-5)20-39(44-22-33)19-26(32(41)45-39)27-12-16-38-21-37(27,38)15-13-29-34(2)14-11-25-17-28(24-9-7-6-8-10-24)43-23-35(25,3)30(34)18-31(40)36(29,38)4/h6-11,19,27-31,40H,12-18,20-23H2,1-5H3/t27-,28-,29+,30+,31+,33+,34+,35-,36-,37+,38+,39-/m0/s1
InChI Key DUBRTGHCJCCRAJ-WJRFPTRPSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C39H50O6
Molecular Weight 614.80 g/mol
Exact Mass 614.36073931 g/mol
Topological Polar Surface Area (TPSA) 74.20 Ų
XlogP 6.40
Atomic LogP (AlogP) 7.08
H-Bond Acceptor 6
H-Bond Donor 1
Rotatable Bonds 3

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of (5R,8R)-3-[(1S,2R,3R,5R,6R,9S,14S,15R,18R,19R)-3-hydroxy-2,6,14-trimethyl-9-phenyl-8-oxahexacyclo[16.3.1.01,18.02,15.05,14.06,11]docos-11-en-19-yl]-8-methoxy-8-methyl-1,6-dioxaspiro[4.4]non-3-en-2-one

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9797 97.97%
Caco-2 - 0.8165 81.65%
Blood Brain Barrier + 0.6500 65.00%
Human oral bioavailability - 0.7286 72.86%
Subcellular localzation Mitochondria 0.7800 78.00%
OATP2B1 inhibitior - 0.8592 85.92%
OATP1B1 inhibitior + 0.8383 83.83%
OATP1B3 inhibitior + 0.9637 96.37%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.7500 75.00%
BSEP inhibitior + 0.9971 99.71%
P-glycoprotein inhibitior + 0.7975 79.75%
P-glycoprotein substrate + 0.6087 60.87%
CYP3A4 substrate + 0.7216 72.16%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8370 83.70%
CYP3A4 inhibition - 0.6196 61.96%
CYP2C9 inhibition - 0.8370 83.70%
CYP2C19 inhibition - 0.7974 79.74%
CYP2D6 inhibition - 0.9204 92.04%
CYP1A2 inhibition - 0.8014 80.14%
CYP2C8 inhibition + 0.8172 81.72%
CYP inhibitory promiscuity - 0.8842 88.42%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.4672 46.72%
Eye corrosion - 0.9890 98.90%
Eye irritation - 0.9182 91.82%
Skin irritation - 0.6406 64.06%
Skin corrosion - 0.9403 94.03%
Ames mutagenesis - 0.6154 61.54%
Human Ether-a-go-go-Related Gene inhibition + 0.8178 81.78%
Micronuclear - 0.6800 68.00%
Hepatotoxicity - 0.5302 53.02%
skin sensitisation - 0.8804 88.04%
Respiratory toxicity + 0.7667 76.67%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.7250 72.50%
Nephrotoxicity + 0.7958 79.58%
Acute Oral Toxicity (c) I 0.5841 58.41%
Estrogen receptor binding + 0.8035 80.35%
Androgen receptor binding + 0.7721 77.21%
Thyroid receptor binding + 0.6100 61.00%
Glucocorticoid receptor binding + 0.8027 80.27%
Aromatase binding + 0.6667 66.67%
PPAR gamma + 0.6704 67.04%
Honey bee toxicity - 0.6725 67.25%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.5000 50.00%
Fish aquatic toxicity + 0.9787 97.87%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.92% 91.11%
CHEMBL2581 P07339 Cathepsin D 97.44% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.52% 95.56%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.99% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.90% 97.09%
CHEMBL2035 P08912 Muscarinic acetylcholine receptor M5 92.11% 94.62%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 91.97% 82.69%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 91.56% 85.14%
CHEMBL1293249 Q13887 Kruppel-like factor 5 91.28% 86.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 90.32% 89.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 89.28% 99.23%
CHEMBL5028 O14672 ADAM10 87.49% 97.50%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.65% 100.00%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 86.28% 97.14%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.62% 95.89%
CHEMBL221 P23219 Cyclooxygenase-1 80.82% 90.17%
CHEMBL3475 P05121 Plasminogen activator inhibitor-1 80.63% 83.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Phyllanthus acutissimus

Cross-Links

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PubChem 24862531
LOTUS LTS0004912
wikiData Q104989159