methyl (2S,3S,4S,5R,6R)-6-[[(3S,4aR,6aR,6bS,8aR,9R,11R,12aS,14aR,14bR)-9-hydroxy-4,4,6a,6b,8a,11,14b-heptamethyl-11-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylate

Details

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Internal ID 3ff8b464-7ca0-448c-860a-ecd832770584
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name methyl (2S,3S,4S,5R,6R)-6-[[(3S,4aR,6aR,6bS,8aR,9R,11R,12aS,14aR,14bR)-9-hydroxy-4,4,6a,6b,8a,11,14b-heptamethyl-11-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylate
SMILES (Canonical) CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(C(C(OC3OC4CCC5(C(C4(C)C)CCC6(C5CC=C7C6(CCC8(C7CC(CC8O)(C)COC9C(C(C(C(O9)CO)O)O)O)C)C)C)C)C(=O)OC)O)O)CO)O)O)O)O)O
SMILES (Isomeric) C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@@H]3[C@H]([C@@H]([C@H](O[C@H]3O[C@H]4CC[C@]5([C@H](C4(C)C)CC[C@@]6([C@@H]5CC=C7[C@]6(CC[C@@]8([C@H]7C[C@@](C[C@H]8O)(C)CO[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O)C)C)C)C)C(=O)OC)O)O)CO)O)O)O)O)O
InChI InChI=1S/C55H90O23/c1-23-32(59)35(62)41(68)47(72-23)77-43-37(64)34(61)27(21-57)74-48(43)78-44-39(66)38(65)42(45(69)70-9)76-49(44)75-31-13-14-53(6)28(50(31,2)3)12-15-55(8)29(53)11-10-24-25-18-51(4,19-30(58)52(25,5)16-17-54(24,55)7)22-71-46-40(67)36(63)33(60)26(20-56)73-46/h10,23,25-44,46-49,56-68H,11-22H2,1-9H3/t23-,25-,26+,27+,28-,29+,30+,31-,32-,33+,34-,35+,36-,37-,38-,39-,40+,41+,42-,43+,44+,46+,47-,48-,49+,51+,52+,53-,54+,55+/m0/s1
InChI Key NMTFEMREBHRUIM-MKQHLJAYSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C55H90O23
Molecular Weight 1119.30 g/mol
Exact Mass 1118.58728911 g/mol
Topological Polar Surface Area (TPSA) 363.00 Ų
XlogP 0.90
Atomic LogP (AlogP) -1.38
H-Bond Acceptor 23
H-Bond Donor 13
Rotatable Bonds 12

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of methyl (2S,3S,4S,5R,6R)-6-[[(3S,4aR,6aR,6bS,8aR,9R,11R,12aS,14aR,14bR)-9-hydroxy-4,4,6a,6b,8a,11,14b-heptamethyl-11-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylate

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7768 77.68%
Caco-2 - 0.8933 89.33%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.8363 83.63%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.7811 78.11%
OATP1B3 inhibitior - 0.4203 42.03%
MATE1 inhibitior - 0.9812 98.12%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior + 0.8746 87.46%
P-glycoprotein inhibitior + 0.7487 74.87%
P-glycoprotein substrate - 0.5664 56.64%
CYP3A4 substrate + 0.7402 74.02%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8776 87.76%
CYP3A4 inhibition - 0.9376 93.76%
CYP2C9 inhibition - 0.8801 88.01%
CYP2C19 inhibition - 0.8916 89.16%
CYP2D6 inhibition - 0.9410 94.10%
CYP1A2 inhibition - 0.8965 89.65%
CYP2C8 inhibition + 0.7800 78.00%
CYP inhibitory promiscuity - 0.9714 97.14%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6190 61.90%
Eye corrosion - 0.9892 98.92%
Eye irritation - 0.9009 90.09%
Skin irritation - 0.6475 64.75%
Skin corrosion - 0.9466 94.66%
Ames mutagenesis - 0.8300 83.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7933 79.33%
Micronuclear - 0.8400 84.00%
Hepatotoxicity - 0.8697 86.97%
skin sensitisation - 0.8860 88.60%
Respiratory toxicity - 0.5667 56.67%
Reproductive toxicity + 0.9111 91.11%
Mitochondrial toxicity - 0.7500 75.00%
Nephrotoxicity - 0.8278 82.78%
Acute Oral Toxicity (c) III 0.7315 73.15%
Estrogen receptor binding + 0.7784 77.84%
Androgen receptor binding + 0.7417 74.17%
Thyroid receptor binding + 0.5516 55.16%
Glucocorticoid receptor binding + 0.7621 76.21%
Aromatase binding + 0.6571 65.71%
PPAR gamma + 0.8122 81.22%
Honey bee toxicity - 0.6643 66.43%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.5100 51.00%
Fish aquatic toxicity + 0.8930 89.30%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.29% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.79% 96.09%
CHEMBL218 P21554 Cannabinoid CB1 receptor 91.55% 96.61%
CHEMBL3714130 P46095 G-protein coupled receptor 6 91.20% 97.36%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.44% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.30% 97.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.21% 94.45%
CHEMBL221 P23219 Cyclooxygenase-1 86.03% 90.17%
CHEMBL3060 Q9Y345 Glycine transporter 2 85.84% 99.17%
CHEMBL1994 P08235 Mineralocorticoid receptor 84.67% 100.00%
CHEMBL5028 O14672 ADAM10 84.57% 97.50%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 84.51% 94.33%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 84.25% 96.21%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.90% 86.33%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 82.94% 95.50%
CHEMBL2581 P07339 Cathepsin D 82.49% 98.95%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.96% 95.89%
CHEMBL5255 O00206 Toll-like receptor 4 81.45% 92.50%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 81.31% 95.89%
CHEMBL1806 P11388 DNA topoisomerase II alpha 81.14% 89.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Sophora tonkinensis

Cross-Links

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PubChem 101635383
LOTUS LTS0181552
wikiData Q105181955