6-desmethyl erythromycin D

Details

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Internal ID e7e42f69-2ce0-4599-ad9f-95ad3b222dc8
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Aminosaccharides > Aminoglycosides
IUPAC Name (3R,4S,5R,6R,7R,9R,11R,12S,13R,14R)-4-[(2S,4R,5S,6S)-4,5-dihydroxy-4,6-dimethyloxan-2-yl]oxy-6-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-14-ethyl-7,12-dihydroxy-3,5,9,11,13-pentamethyl-oxacyclotetradecane-2,10-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C35H63NO12/c1-12-25-18(4)28(39)19(5)27(38)16(2)13-24(37)31(48-34-29(40)23(36(10)11)14-17(3)44-34)20(6)30(21(7)33(42)46-25)47-26-15-35(9,43)32(41)22(8)45-26/h16-26,28-32,34,37,39-41,43H,12-15H2,1-11H3/t16-,17-,18+,19+,20-,21-,22+,23+,24-,25-,26-,28+,29-,30+,31-,32+,34+,35-/m1/s1
InChI Key YDABFNUDXGCGAC-ONZNIBQSSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C35H63NO12
Molecular Weight 689.90 g/mol
Exact Mass 689.43502644 g/mol
Topological Polar Surface Area (TPSA) 185.00 Ų
XlogP 3.10
Atomic LogP (AlogP) 1.63
H-Bond Acceptor 13
H-Bond Donor 5
Rotatable Bonds 6

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of 6-desmethyl erythromycin D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7859 78.59%
Caco-2 - 0.8803 88.03%
Blood Brain Barrier - 1.0000 100.00%
Human oral bioavailability - 0.7429 74.29%
Subcellular localzation Lysosomes 0.6348 63.48%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9014 90.14%
OATP1B3 inhibitior + 0.9480 94.80%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.6765 67.65%
P-glycoprotein inhibitior + 0.6604 66.04%
P-glycoprotein substrate + 0.7789 77.89%
CYP3A4 substrate + 0.6992 69.92%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8807 88.07%
CYP3A4 inhibition - 0.5744 57.44%
CYP2C9 inhibition - 0.9070 90.70%
CYP2C19 inhibition - 0.9074 90.74%
CYP2D6 inhibition - 0.9230 92.30%
CYP1A2 inhibition - 0.9045 90.45%
CYP2C8 inhibition - 0.8913 89.13%
CYP inhibitory promiscuity - 0.9391 93.91%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.5441 54.41%
Eye corrosion - 0.9883 98.83%
Eye irritation - 0.9192 91.92%
Skin irritation - 0.7819 78.19%
Skin corrosion - 0.9180 91.80%
Ames mutagenesis - 0.7483 74.83%
Human Ether-a-go-go-Related Gene inhibition - 0.6791 67.91%
Micronuclear + 0.5700 57.00%
Hepatotoxicity + 0.9000 90.00%
skin sensitisation - 0.9376 93.76%
Respiratory toxicity + 0.8444 84.44%
Reproductive toxicity + 0.8333 83.33%
Mitochondrial toxicity + 0.9750 97.50%
Nephrotoxicity - 0.8553 85.53%
Acute Oral Toxicity (c) III 0.7984 79.84%
Estrogen receptor binding - 0.5354 53.54%
Androgen receptor binding - 0.5380 53.80%
Thyroid receptor binding - 0.6717 67.17%
Glucocorticoid receptor binding + 0.7046 70.46%
Aromatase binding + 0.6269 62.69%
PPAR gamma + 0.6684 66.84%
Honey bee toxicity - 0.6274 62.74%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity + 0.6000 60.00%
Fish aquatic toxicity - 0.4056 40.56%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.12% 96.09%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 95.48% 85.14%
CHEMBL2581 P07339 Cathepsin D 93.36% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.42% 91.11%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.11% 97.09%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 89.67% 96.21%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.73% 95.56%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 88.62% 96.77%
CHEMBL1806 P11388 DNA topoisomerase II alpha 88.44% 89.00%
CHEMBL241 Q14432 Phosphodiesterase 3A 87.76% 92.94%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 87.31% 95.64%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.54% 100.00%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 84.37% 86.92%
CHEMBL253 P34972 Cannabinoid CB2 receptor 83.41% 97.25%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 82.96% 94.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.98% 95.89%
CHEMBL340 P08684 Cytochrome P450 3A4 81.92% 91.19%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 81.90% 94.33%
CHEMBL4208 P20618 Proteasome component C5 81.76% 90.00%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 81.05% 92.62%
CHEMBL2069156 Q14145 Kelch-like ECH-associated protein 1 80.67% 82.38%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 80.47% 97.14%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.32% 86.33%
CHEMBL218 P21554 Cannabinoid CB1 receptor 80.23% 96.61%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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Cross-Links

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PubChem 139588862
LOTUS LTS0005849
wikiData Q105346624