6-[4,5-Dihydroxy-6-(hydroxymethyl)-3-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxyoxan-2-yl]oxy-1,2,3,7-tetramethoxyxanthen-9-one

Details

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Internal ID f1e9ba5f-5965-43cf-a4f4-ffacb24e2d9d
Taxonomy Organoheterocyclic compounds > Benzopyrans > 1-benzopyrans > Xanthones
IUPAC Name 6-[4,5-dihydroxy-6-(hydroxymethyl)-3-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxyoxan-2-yl]oxy-1,2,3,7-tetramethoxyxanthen-9-one
SMILES (Canonical) CC1C(C(C(C(O1)OC2C(C(C(OC2OC3=C(C=C4C(=C3)OC5=CC(=C(C(=C5C4=O)OC)OC)OC)OC)CO)O)O)O)O)O
SMILES (Isomeric) CC1C(C(C(C(O1)OC2C(C(C(OC2OC3=C(C=C4C(=C3)OC5=CC(=C(C(=C5C4=O)OC)OC)OC)OC)CO)O)O)O)O)O
InChI InChI=1S/C29H36O16/c1-10-19(31)22(34)24(36)28(41-10)45-27-23(35)21(33)17(9-30)44-29(27)43-14-7-12-11(6-13(14)37-2)20(32)18-15(42-12)8-16(38-3)25(39-4)26(18)40-5/h6-8,10,17,19,21-24,27-31,33-36H,9H2,1-5H3
InChI Key XLIRDJZRGNDSCS-UHFFFAOYSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C29H36O16
Molecular Weight 640.60 g/mol
Exact Mass 640.20033506 g/mol
Topological Polar Surface Area (TPSA) 222.00 Ų
XlogP -0.40
Atomic LogP (AlogP) -0.99
H-Bond Acceptor 16
H-Bond Donor 6
Rotatable Bonds 9

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of 6-[4,5-Dihydroxy-6-(hydroxymethyl)-3-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxyoxan-2-yl]oxy-1,2,3,7-tetramethoxyxanthen-9-one

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5904 59.04%
Caco-2 - 0.8614 86.14%
Blood Brain Barrier - 0.8250 82.50%
Human oral bioavailability - 0.7571 75.71%
Subcellular localzation Mitochondria 0.5170 51.70%
OATP2B1 inhibitior - 0.8591 85.91%
OATP1B1 inhibitior + 0.8822 88.22%
OATP1B3 inhibitior + 0.9530 95.30%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior + 0.7675 76.75%
P-glycoprotein inhibitior - 0.4302 43.02%
P-glycoprotein substrate + 0.5387 53.87%
CYP3A4 substrate + 0.6276 62.76%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8367 83.67%
CYP3A4 inhibition - 0.9367 93.67%
CYP2C9 inhibition - 0.9525 95.25%
CYP2C19 inhibition - 0.9383 93.83%
CYP2D6 inhibition - 0.9272 92.72%
CYP1A2 inhibition - 0.8728 87.28%
CYP2C8 inhibition + 0.4784 47.84%
CYP inhibitory promiscuity - 0.8307 83.07%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.7093 70.93%
Eye corrosion - 0.9896 98.96%
Eye irritation - 0.9233 92.33%
Skin irritation - 0.8380 83.80%
Skin corrosion - 0.9663 96.63%
Ames mutagenesis + 0.5208 52.08%
Human Ether-a-go-go-Related Gene inhibition + 0.6785 67.85%
Micronuclear + 0.5833 58.33%
Hepatotoxicity - 0.7101 71.01%
skin sensitisation - 0.9269 92.69%
Respiratory toxicity + 0.6000 60.00%
Reproductive toxicity + 0.7556 75.56%
Mitochondrial toxicity - 0.6250 62.50%
Nephrotoxicity - 0.9718 97.18%
Acute Oral Toxicity (c) III 0.6857 68.57%
Estrogen receptor binding + 0.8172 81.72%
Androgen receptor binding + 0.5236 52.36%
Thyroid receptor binding + 0.5710 57.10%
Glucocorticoid receptor binding + 0.6595 65.95%
Aromatase binding + 0.6275 62.75%
PPAR gamma + 0.7160 71.60%
Honey bee toxicity - 0.7057 70.57%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.5900 59.00%
Fish aquatic toxicity + 0.7092 70.92%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.66% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 95.43% 89.00%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 95.24% 94.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 91.16% 99.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.84% 86.33%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.38% 96.09%
CHEMBL2581 P07339 Cathepsin D 89.03% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.54% 95.56%
CHEMBL3714130 P46095 G-protein coupled receptor 6 88.51% 97.36%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 87.12% 85.14%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 87.09% 96.00%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 84.03% 96.21%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 83.38% 86.92%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 81.97% 95.83%
CHEMBL241 Q14432 Phosphodiesterase 3A 81.32% 92.94%
CHEMBL3401 O75469 Pregnane X receptor 80.60% 94.73%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Polygala tenuifolia

Cross-Links

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PubChem 163065862
LOTUS LTS0102269
wikiData Q105330011