(1R,2R,5S,8S,9R,10S,11S,12R,13S)-12-hydroxy-11-methyl-6-methylidene-4,16-dioxo-13-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-15-oxapentacyclo[9.3.2.15,8.01,10.02,8]heptadecane-9-carboxylic acid

Details

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Internal ID 7839bbd8-618b-4197-abd9-8e845200d1bf
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Diterpene glycosides
IUPAC Name (1R,2R,5S,8S,9R,10S,11S,12R,13S)-12-hydroxy-11-methyl-6-methylidene-4,16-dioxo-13-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-15-oxapentacyclo[9.3.2.15,8.01,10.02,8]heptadecane-9-carboxylic acid
SMILES (Canonical) CC12C3C(C45CC(C(=C)C4)C(=O)CC5C3(CC(C1O)OC6C(C(C(C(O6)CO)O)O)O)OC2=O)C(=O)O
SMILES (Isomeric) C[C@]12[C@@H]3[C@H]([C@@]45C[C@@H](C(=C)C4)C(=O)C[C@H]5[C@@]3(C[C@@H]([C@@H]1O)O[C@@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)OC2=O)C(=O)O
InChI InChI=1S/C25H32O12/c1-8-4-24-5-9(8)10(27)3-13(24)25-6-11(35-21-17(30)16(29)15(28)12(7-26)36-21)19(31)23(2,22(34)37-25)18(25)14(24)20(32)33/h9,11-19,21,26,28-31H,1,3-7H2,2H3,(H,32,33)/t9-,11-,12+,13+,14-,15+,16-,17+,18-,19-,21-,23-,24+,25+/m0/s1
InChI Key XNKPPORMYAPLOL-IOJPXVPJSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C25H32O12
Molecular Weight 524.50 g/mol
Exact Mass 524.18937645 g/mol
Topological Polar Surface Area (TPSA) 200.00 Ų
XlogP -2.30
Atomic LogP (AlogP) -1.89
H-Bond Acceptor 11
H-Bond Donor 6
Rotatable Bonds 4

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of (1R,2R,5S,8S,9R,10S,11S,12R,13S)-12-hydroxy-11-methyl-6-methylidene-4,16-dioxo-13-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-15-oxapentacyclo[9.3.2.15,8.01,10.02,8]heptadecane-9-carboxylic acid

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6403 64.03%
Caco-2 - 0.8504 85.04%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.8571 85.71%
Subcellular localzation Mitochondria 0.7851 78.51%
OATP2B1 inhibitior - 0.7196 71.96%
OATP1B1 inhibitior + 0.8476 84.76%
OATP1B3 inhibitior + 0.9576 95.76%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior - 0.5074 50.74%
P-glycoprotein inhibitior - 0.6250 62.50%
P-glycoprotein substrate - 0.6940 69.40%
CYP3A4 substrate + 0.6802 68.02%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8817 88.17%
CYP3A4 inhibition - 0.8623 86.23%
CYP2C9 inhibition - 0.8631 86.31%
CYP2C19 inhibition - 0.8490 84.90%
CYP2D6 inhibition - 0.9417 94.17%
CYP1A2 inhibition - 0.8972 89.72%
CYP2C8 inhibition + 0.4731 47.31%
CYP inhibitory promiscuity - 0.8651 86.51%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6402 64.02%
Eye corrosion - 0.9864 98.64%
Eye irritation - 0.9229 92.29%
Skin irritation - 0.6912 69.12%
Skin corrosion - 0.9371 93.71%
Ames mutagenesis - 0.6408 64.08%
Human Ether-a-go-go-Related Gene inhibition - 0.4510 45.10%
Micronuclear - 0.7100 71.00%
Hepatotoxicity - 0.7348 73.48%
skin sensitisation - 0.8451 84.51%
Respiratory toxicity - 0.6000 60.00%
Reproductive toxicity + 0.7778 77.78%
Mitochondrial toxicity + 0.7375 73.75%
Nephrotoxicity + 0.7420 74.20%
Acute Oral Toxicity (c) III 0.4656 46.56%
Estrogen receptor binding + 0.7304 73.04%
Androgen receptor binding + 0.7089 70.89%
Thyroid receptor binding - 0.5246 52.46%
Glucocorticoid receptor binding + 0.5559 55.59%
Aromatase binding + 0.6612 66.12%
PPAR gamma + 0.6270 62.70%
Honey bee toxicity - 0.8389 83.89%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.6400 64.00%
Fish aquatic toxicity + 0.9642 96.42%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.64% 91.11%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 92.03% 85.14%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.74% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.81% 97.09%
CHEMBL2581 P07339 Cathepsin D 88.19% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 88.15% 96.09%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 88.04% 95.50%
CHEMBL1293249 Q13887 Kruppel-like factor 5 84.23% 86.33%
CHEMBL3060 Q9Y345 Glycine transporter 2 82.98% 99.17%
CHEMBL5255 O00206 Toll-like receptor 4 81.48% 92.50%
CHEMBL3401 O75469 Pregnane X receptor 80.35% 94.73%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Ipomoea nil

Cross-Links

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PubChem 162989094
LOTUS LTS0152215
wikiData Q105331743