5-Hydroxy-3-Hydroxymethyl-2-Methyl-7-Methoxychromone

Details

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Internal ID a9c37896-9fc4-493f-9f52-a01bb480860c
Taxonomy Organoheterocyclic compounds > Benzopyrans > 1-benzopyrans > Chromones
IUPAC Name 5-hydroxy-3-(hydroxymethyl)-7-methoxy-2-methylchromen-4-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C12H12O5/c1-6-8(5-13)12(15)11-9(14)3-7(16-2)4-10(11)17-6/h3-4,13-14H,5H2,1-2H3
InChI Key VNPAXPBNMQPWKD-UHFFFAOYSA-N
Popularity 7 references in papers

Physical and Chemical Properties

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Molecular Formula C12H12O5
Molecular Weight 236.22 g/mol
Exact Mass 236.06847348 g/mol
Topological Polar Surface Area (TPSA) 76.00 Ų
XlogP 1.20
Atomic LogP (AlogP) 1.31
H-Bond Acceptor 5
H-Bond Donor 2
Rotatable Bonds 2

Synonyms

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5-hydroxy-3-hydroxymethyl-2-methyl-7-methoxychromone
BDBM50208245

2D Structure

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2D Structure of 5-Hydroxy-3-Hydroxymethyl-2-Methyl-7-Methoxychromone

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9788 97.88%
Caco-2 + 0.7323 73.23%
Blood Brain Barrier - 0.8000 80.00%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.7610 76.10%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8554 85.54%
OATP1B3 inhibitior + 0.9226 92.26%
MATE1 inhibitior - 0.6800 68.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.6693 66.93%
P-glycoprotein inhibitior - 0.9277 92.77%
P-glycoprotein substrate - 0.9296 92.96%
CYP3A4 substrate - 0.5266 52.66%
CYP2C9 substrate - 0.6228 62.28%
CYP2D6 substrate - 0.8394 83.94%
CYP3A4 inhibition - 0.7018 70.18%
CYP2C9 inhibition - 0.5829 58.29%
CYP2C19 inhibition + 0.6882 68.82%
CYP2D6 inhibition - 0.7705 77.05%
CYP1A2 inhibition + 0.8488 84.88%
CYP2C8 inhibition - 0.7012 70.12%
CYP inhibitory promiscuity + 0.6882 68.82%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9213 92.13%
Carcinogenicity (trinary) Non-required 0.7664 76.64%
Eye corrosion - 0.9764 97.64%
Eye irritation + 0.9379 93.79%
Skin irritation - 0.7702 77.02%
Skin corrosion - 0.9747 97.47%
Ames mutagenesis + 0.5922 59.22%
Human Ether-a-go-go-Related Gene inhibition - 0.7990 79.90%
Micronuclear + 0.5600 56.00%
Hepatotoxicity - 0.6198 61.98%
skin sensitisation - 0.9051 90.51%
Respiratory toxicity + 0.6222 62.22%
Reproductive toxicity + 0.7222 72.22%
Mitochondrial toxicity - 0.5875 58.75%
Nephrotoxicity - 0.7264 72.64%
Acute Oral Toxicity (c) III 0.7288 72.88%
Estrogen receptor binding + 0.5328 53.28%
Androgen receptor binding + 0.6964 69.64%
Thyroid receptor binding - 0.6999 69.99%
Glucocorticoid receptor binding + 0.6700 67.00%
Aromatase binding + 0.6777 67.77%
PPAR gamma + 0.7256 72.56%
Honey bee toxicity - 0.9293 92.93%
Biodegradation - 0.6000 60.00%
Crustacea aquatic toxicity - 0.6400 64.00%
Fish aquatic toxicity + 0.8818 88.18%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.00% 91.11%
CHEMBL3192 Q9BY41 Histone deacetylase 8 95.77% 93.99%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.82% 95.56%
CHEMBL3401 O75469 Pregnane X receptor 93.59% 94.73%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 92.78% 94.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 91.68% 99.15%
CHEMBL2581 P07339 Cathepsin D 90.82% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.21% 86.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.25% 89.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.08% 99.17%
CHEMBL3714130 P46095 G-protein coupled receptor 6 88.62% 97.36%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 87.99% 86.92%
CHEMBL4208 P20618 Proteasome component C5 87.49% 90.00%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 85.86% 96.95%
CHEMBL3194 P02766 Transthyretin 85.77% 90.71%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 83.20% 94.45%
CHEMBL4581 P52732 Kinesin-like protein 1 81.35% 93.18%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 81.13% 85.14%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 15434232
LOTUS LTS0096081
wikiData Q105289829