5-(3,4-Dihydroxy-5-hydroxymethyltetrahydrofuran-2-yl)-1-methyl-1H-pyrimidine-2,4-dione

Details

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Internal ID bf27ab26-3543-4c72-ab37-41bb9408acbe
Taxonomy Nucleosides, nucleotides, and analogues > Nucleoside and nucleotide analogues
IUPAC Name 5-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1-methylpyrimidine-2,4-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C10H14N2O6/c1-12-2-4(9(16)11-10(12)17)8-7(15)6(14)5(3-13)18-8/h2,5-8,13-15H,3H2,1H3,(H,11,16,17)
InChI Key UVBYMVOUBXYSFV-UHFFFAOYSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C10H14N2O6
Molecular Weight 258.23 g/mol
Exact Mass 258.08518617 g/mol
Topological Polar Surface Area (TPSA) 119.00 Ų
XlogP -2.60
Atomic LogP (AlogP) -2.77
H-Bond Acceptor 7
H-Bond Donor 4
Rotatable Bonds 2

Synonyms

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5-(3,4-Dihydroxy-5-hydroxymethyltetrahydrofuran-2-yl)-1-methyl-1H-pyrimidine-2,4-dione
13860-38-3
NSC-240023
Uracil, 1-methyl-5-.beta.-D-ribofuranosyl-
SCHEMBL18512838
UVBYMVOUBXYSFV-UHFFFAOYSA-N
NSC240023

2D Structure

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2D Structure of 5-(3,4-Dihydroxy-5-hydroxymethyltetrahydrofuran-2-yl)-1-methyl-1H-pyrimidine-2,4-dione

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8293 82.93%
Caco-2 - 0.9505 95.05%
Blood Brain Barrier + 0.6000 60.00%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Mitochondria 0.5078 50.78%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8710 87.10%
OATP1B3 inhibitior + 0.9497 94.97%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.9689 96.89%
P-glycoprotein inhibitior - 0.9181 91.81%
P-glycoprotein substrate - 0.9206 92.06%
CYP3A4 substrate - 0.5457 54.57%
CYP2C9 substrate - 0.5928 59.28%
CYP2D6 substrate - 0.8704 87.04%
CYP3A4 inhibition - 0.9588 95.88%
CYP2C9 inhibition - 0.9321 93.21%
CYP2C19 inhibition - 0.9161 91.61%
CYP2D6 inhibition - 0.9246 92.46%
CYP1A2 inhibition - 0.8872 88.72%
CYP2C8 inhibition - 0.9719 97.19%
CYP inhibitory promiscuity - 0.9775 97.75%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.8700 87.00%
Carcinogenicity (trinary) Non-required 0.4883 48.83%
Eye corrosion - 0.9894 98.94%
Eye irritation - 0.9285 92.85%
Skin irritation - 0.8247 82.47%
Skin corrosion - 0.9503 95.03%
Ames mutagenesis - 0.6454 64.54%
Human Ether-a-go-go-Related Gene inhibition - 0.7028 70.28%
Micronuclear + 0.9500 95.00%
Hepatotoxicity + 0.7125 71.25%
skin sensitisation - 0.9043 90.43%
Respiratory toxicity + 0.6667 66.67%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.9125 91.25%
Nephrotoxicity - 0.5962 59.62%
Acute Oral Toxicity (c) III 0.6474 64.74%
Estrogen receptor binding - 0.6941 69.41%
Androgen receptor binding - 0.5356 53.56%
Thyroid receptor binding - 0.5323 53.23%
Glucocorticoid receptor binding - 0.6275 62.75%
Aromatase binding - 0.7724 77.24%
PPAR gamma + 0.5873 58.73%
Honey bee toxicity - 0.9395 93.95%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.7000 70.00%
Fish aquatic toxicity - 0.8946 89.46%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.58% 96.09%
CHEMBL2581 P07339 Cathepsin D 96.36% 98.95%
CHEMBL253 P34972 Cannabinoid CB2 receptor 94.09% 97.25%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 94.09% 86.92%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.49% 95.56%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 89.15% 85.14%
CHEMBL220 P22303 Acetylcholinesterase 85.76% 94.45%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.18% 89.00%
CHEMBL3401 O75469 Pregnane X receptor 83.22% 94.73%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 82.38% 99.23%
CHEMBL5103 Q969S8 Histone deacetylase 10 81.49% 90.08%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 315282
LOTUS LTS0229358
wikiData Q104198965