4'-Demethyldeoxypodophyllotoxin beta-D-glucopyranoside

Details

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Internal ID 04c7a178-6e1a-42e5-90b4-19b408359e2e
Taxonomy Lignans, neolignans and related compounds > Lignan glycosides
IUPAC Name (5R,5aR,8aR)-5-[3,5-dimethoxy-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphenyl]-5a,8,8a,9-tetrahydro-5H-[2]benzofuro[5,6-f][1,3]benzodioxol-6-one
SMILES (Canonical) COC1=CC(=CC(=C1OC2C(C(C(C(O2)CO)O)O)O)OC)C3C4C(CC5=CC6=C(C=C35)OCO6)COC4=O
SMILES (Isomeric) COC1=CC(=CC(=C1O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)OC)[C@H]3[C@@H]4[C@@H](CC5=CC6=C(C=C35)OCO6)COC4=O
InChI InChI=1S/C27H30O12/c1-33-17-5-12(6-18(34-2)25(17)39-27-24(31)23(30)22(29)19(8-28)38-27)20-14-7-16-15(36-10-37-16)4-11(14)3-13-9-35-26(32)21(13)20/h4-7,13,19-24,27-31H,3,8-10H2,1-2H3/t13-,19+,20+,21-,22+,23-,24+,27-/m0/s1
InChI Key QMXNRLBPHJPLKV-QNRBAVQLSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C27H30O12
Molecular Weight 546.50 g/mol
Exact Mass 546.17372639 g/mol
Topological Polar Surface Area (TPSA) 163.00 Ų
XlogP 1.20
Atomic LogP (AlogP) 0.09
H-Bond Acceptor 12
H-Bond Donor 4
Rotatable Bonds 6

Synonyms

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(5R,5aR,8aR)-5-[3,5-dimethoxy-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphenyl]-5a,8,8a,9-tetrahydro-5H-[2]benzofuro[5,6-f][1,3]benzodioxol-6-one
78178-42-4
CHEMBL1778163

2D Structure

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2D Structure of 4'-Demethyldeoxypodophyllotoxin beta-D-glucopyranoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.5958 59.58%
Caco-2 - 0.8075 80.75%
Blood Brain Barrier - 0.7750 77.50%
Human oral bioavailability - 0.6286 62.86%
Subcellular localzation Mitochondria 0.6367 63.67%
OATP2B1 inhibitior - 0.8620 86.20%
OATP1B1 inhibitior + 0.8517 85.17%
OATP1B3 inhibitior + 0.9648 96.48%
MATE1 inhibitior - 0.8200 82.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.8414 84.14%
P-glycoprotein inhibitior - 0.4752 47.52%
P-glycoprotein substrate - 0.7157 71.57%
CYP3A4 substrate + 0.6599 65.99%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8419 84.19%
CYP3A4 inhibition - 0.5237 52.37%
CYP2C9 inhibition - 0.8011 80.11%
CYP2C19 inhibition - 0.7261 72.61%
CYP2D6 inhibition - 0.8817 88.17%
CYP1A2 inhibition - 0.9203 92.03%
CYP2C8 inhibition - 0.5607 56.07%
CYP inhibitory promiscuity + 0.6363 63.63%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6053 60.53%
Eye corrosion - 0.9899 98.99%
Eye irritation - 0.9403 94.03%
Skin irritation - 0.8240 82.40%
Skin corrosion - 0.9490 94.90%
Ames mutagenesis - 0.7000 70.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3712 37.12%
Micronuclear + 0.7133 71.33%
Hepatotoxicity - 0.6375 63.75%
skin sensitisation - 0.8827 88.27%
Respiratory toxicity + 0.7778 77.78%
Reproductive toxicity + 0.8667 86.67%
Mitochondrial toxicity + 0.7125 71.25%
Nephrotoxicity + 0.7379 73.79%
Acute Oral Toxicity (c) III 0.7719 77.19%
Estrogen receptor binding + 0.7896 78.96%
Androgen receptor binding + 0.6701 67.01%
Thyroid receptor binding + 0.5654 56.54%
Glucocorticoid receptor binding + 0.6607 66.07%
Aromatase binding - 0.6606 66.06%
PPAR gamma + 0.5962 59.62%
Honey bee toxicity - 0.7200 72.00%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity - 0.7000 70.00%
Fish aquatic toxicity + 0.7675 76.75%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 99.43% 85.14%
CHEMBL4040 P28482 MAP kinase ERK2 99.34% 83.82%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.09% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.13% 96.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.50% 89.00%
CHEMBL2581 P07339 Cathepsin D 92.92% 98.95%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 92.64% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.82% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.05% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.65% 86.33%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 90.12% 92.62%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 88.22% 95.89%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 87.06% 94.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.43% 95.89%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 86.01% 96.77%
CHEMBL4247 Q9UM73 ALK tyrosine kinase receptor 85.86% 96.86%
CHEMBL3060 Q9Y345 Glycine transporter 2 85.46% 99.17%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 85.07% 96.00%
CHEMBL1994 P08235 Mineralocorticoid receptor 84.96% 100.00%
CHEMBL3401 O75469 Pregnane X receptor 84.51% 94.73%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 84.37% 89.62%
CHEMBL218 P21554 Cannabinoid CB1 receptor 81.95% 96.61%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 80.53% 96.21%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Juniperus communis
Lindera erythrocarpa
Podophyllum hexandrum

Cross-Links

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PubChem 12311205
NPASS NPC115624
ChEMBL CHEMBL1778163
LOTUS LTS0251822
wikiData Q105313851