3,4,5-Trihydroxy-9H-xanthen-9-one

Details

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Internal ID e3f495eb-1c36-4a62-abf2-14b879e3117e
Taxonomy Organoheterocyclic compounds > Benzopyrans > 1-benzopyrans > Xanthones
IUPAC Name 3,4,5-trihydroxyxanthen-9-one
SMILES (Canonical) C1=CC2=C(C(=C1)O)OC3=C(C2=O)C=CC(=C3O)O
SMILES (Isomeric) C1=CC2=C(C(=C1)O)OC3=C(C2=O)C=CC(=C3O)O
InChI InChI=1S/C13H8O5/c14-8-5-4-7-10(16)6-2-1-3-9(15)12(6)18-13(7)11(8)17/h1-5,14-15,17H
InChI Key GYXLJFKBGTVCHD-UHFFFAOYSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C13H8O5
Molecular Weight 244.20 g/mol
Exact Mass 244.03717335 g/mol
Topological Polar Surface Area (TPSA) 87.00 Ų
XlogP 1.90
Atomic LogP (AlogP) 2.06
H-Bond Acceptor 5
H-Bond Donor 3
Rotatable Bonds 0

Synonyms

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277754-48-0
3,4,5-trihydroxyxanthone
SCHEMBL151934
CHEMBL3704818
BDBM174833
3,4,5-Trihydroxy-9H-xanthene-9-one
US9114126, MB5
J3.540.000A
F13519

2D Structure

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2D Structure of 3,4,5-Trihydroxy-9H-xanthen-9-one

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9438 94.38%
Caco-2 - 0.7697 76.97%
Blood Brain Barrier - 0.7500 75.00%
Human oral bioavailability - 0.5286 52.86%
Subcellular localzation Mitochondria 0.7026 70.26%
OATP2B1 inhibitior - 0.6881 68.81%
OATP1B1 inhibitior + 0.9515 95.15%
OATP1B3 inhibitior + 0.9936 99.36%
MATE1 inhibitior - 0.7800 78.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.9131 91.31%
P-glycoprotein inhibitior - 0.8863 88.63%
P-glycoprotein substrate - 0.9195 91.95%
CYP3A4 substrate - 0.5715 57.15%
CYP2C9 substrate - 0.8303 83.03%
CYP2D6 substrate - 0.8155 81.55%
CYP3A4 inhibition - 0.7624 76.24%
CYP2C9 inhibition - 0.5560 55.60%
CYP2C19 inhibition - 0.8199 81.99%
CYP2D6 inhibition - 0.8877 88.77%
CYP1A2 inhibition + 0.9683 96.83%
CYP2C8 inhibition - 0.8086 80.86%
CYP inhibitory promiscuity - 0.6892 68.92%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.5787 57.87%
Eye corrosion - 0.9831 98.31%
Eye irritation + 0.9656 96.56%
Skin irritation + 0.6757 67.57%
Skin corrosion - 0.9607 96.07%
Ames mutagenesis + 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8926 89.26%
Micronuclear + 0.9400 94.00%
Hepatotoxicity + 0.7500 75.00%
skin sensitisation - 0.6642 66.42%
Respiratory toxicity + 0.5333 53.33%
Reproductive toxicity + 0.7111 71.11%
Mitochondrial toxicity + 0.5750 57.50%
Nephrotoxicity - 0.6971 69.71%
Acute Oral Toxicity (c) II 0.5564 55.64%
Estrogen receptor binding + 0.8044 80.44%
Androgen receptor binding + 0.6475 64.75%
Thyroid receptor binding + 0.6366 63.66%
Glucocorticoid receptor binding + 0.9521 95.21%
Aromatase binding + 0.8715 87.15%
PPAR gamma + 0.7912 79.12%
Honey bee toxicity - 0.9365 93.65%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.6500 65.00%
Fish aquatic toxicity + 0.9101 91.01%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.68% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 95.31% 95.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 91.42% 99.23%
CHEMBL1806 P11388 DNA topoisomerase II alpha 91.21% 89.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 90.88% 99.15%
CHEMBL1951 P21397 Monoamine oxidase A 90.47% 91.49%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 88.17% 94.00%
CHEMBL2581 P07339 Cathepsin D 88.16% 98.95%
CHEMBL1163101 O75460 Serine/threonine-protein kinase/endoribonuclease IRE1 87.97% 98.11%
CHEMBL3401 O75469 Pregnane X receptor 85.44% 94.73%
CHEMBL3192 Q9BY41 Histone deacetylase 8 84.08% 93.99%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 81.75% 83.57%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 80.69% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Annona muricata
Boehmeria dura
Cirsium carolinianum
Dipentodon sinicus
Hypericum oblongifolium
Pericome caudata
Piper lanceifolium

Cross-Links

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PubChem 46209537
NPASS NPC43669
ChEMBL CHEMBL3704818