3,4-Pyrrolidinediol, 2-(hydroxymethyl)-1-methyl-, (2R,3R,4R)-

Details

Top
Internal ID 7dfa1542-c512-4cb0-a018-1d06935056af
Taxonomy Organoheterocyclic compounds > Pyrrolidines > N-alkylpyrrolidines
IUPAC Name (2R,3R,4R)-2-(hydroxymethyl)-1-methylpyrrolidine-3,4-diol
SMILES (Canonical) CN1CC(C(C1CO)O)O
SMILES (Isomeric) CN1C[C@H]([C@@H]([C@H]1CO)O)O
InChI InChI=1S/C6H13NO3/c1-7-2-5(9)6(10)4(7)3-8/h4-6,8-10H,2-3H2,1H3/t4-,5-,6-/m1/s1
InChI Key UBVOJPDDTVFNFJ-HSUXUTPPSA-N
Popularity 412 references in papers

Physical and Chemical Properties

Top
Molecular Formula C6H13NO3
Molecular Weight 147.17 g/mol
Exact Mass 147.08954328 g/mol
Topological Polar Surface Area (TPSA) 63.90 Ų
XlogP -1.30
Atomic LogP (AlogP) -1.99
H-Bond Acceptor 4
H-Bond Donor 3
Rotatable Bonds 1

Synonyms

Top
MeDAB
3,4-Pyrrolidinediol, 2-(hydroxymethyl)-1-methyl-, (2R,3R,4R)-
CHEMBL80148
(2R,3R,4R)-2-(hydroxymethyl)-1-methylpyrrolidine-3,4-diol
N-Methyl-1,4-dideoxy-1,4-imino-D-arabinitol
SCHEMBL6135276
DTXSID70151972
BDBM50031480
(2R,3R,4R)-2-(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol
(2R,3R,4R)-2-Hydroxymethyl-1-methyl-pyrrolidine-3,4-diol

2D Structure

Top
2D Structure of 3,4-Pyrrolidinediol, 2-(hydroxymethyl)-1-methyl-, (2R,3R,4R)-

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7744 77.44%
Caco-2 - 0.6975 69.75%
Blood Brain Barrier - 0.5500 55.00%
Human oral bioavailability + 0.7286 72.86%
Subcellular localzation Lysosomes 0.6617 66.17%
OATP2B1 inhibitior - 0.8488 84.88%
OATP1B1 inhibitior + 0.9741 97.41%
OATP1B3 inhibitior + 0.9431 94.31%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.7250 72.50%
BSEP inhibitior - 0.9364 93.64%
P-glycoprotein inhibitior - 0.9873 98.73%
P-glycoprotein substrate - 0.8312 83.12%
CYP3A4 substrate - 0.5860 58.60%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.4546 45.46%
CYP3A4 inhibition - 0.9969 99.69%
CYP2C9 inhibition - 0.9052 90.52%
CYP2C19 inhibition - 0.9279 92.79%
CYP2D6 inhibition - 0.9235 92.35%
CYP1A2 inhibition - 0.9082 90.82%
CYP2C8 inhibition - 0.9973 99.73%
CYP inhibitory promiscuity - 0.9955 99.55%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.5960 59.60%
Eye corrosion - 0.9643 96.43%
Eye irritation - 0.5838 58.38%
Skin irritation - 0.7174 71.74%
Skin corrosion - 0.8239 82.39%
Ames mutagenesis - 0.7778 77.78%
Human Ether-a-go-go-Related Gene inhibition - 0.6001 60.01%
Micronuclear + 0.5400 54.00%
Hepatotoxicity - 0.7324 73.24%
skin sensitisation - 0.8709 87.09%
Respiratory toxicity + 0.5111 51.11%
Reproductive toxicity + 0.5667 56.67%
Mitochondrial toxicity + 0.7875 78.75%
Nephrotoxicity - 0.6540 65.40%
Acute Oral Toxicity (c) III 0.6035 60.35%
Estrogen receptor binding - 0.9137 91.37%
Androgen receptor binding - 0.8578 85.78%
Thyroid receptor binding - 0.8041 80.41%
Glucocorticoid receptor binding - 0.8403 84.03%
Aromatase binding - 0.9156 91.56%
PPAR gamma - 0.9036 90.36%
Honey bee toxicity - 0.9203 92.03%
Biodegradation + 0.6250 62.50%
Crustacea aquatic toxicity - 0.8700 87.00%
Fish aquatic toxicity - 0.9473 94.73%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.24% 96.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 90.29% 97.25%
CHEMBL2581 P07339 Cathepsin D 89.15% 98.95%
CHEMBL4005 P42336 PI3-kinase p110-alpha subunit 81.08% 97.47%
CHEMBL3137262 O60341 LSD1/CoREST complex 80.33% 97.09%
CHEMBL226 P30542 Adenosine A1 receptor 80.15% 95.93%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Angylocalyx pynaertii

Cross-Links

Top
PubChem 451992
LOTUS LTS0154187
wikiData Q83018521