(3-Hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl)methyl dihydrogen phosphate

Details

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Internal ID bc233d30-a213-4327-ba5d-f9f8d3f51696
Taxonomy Nucleosides, nucleotides, and analogues > Pyrimidine nucleotides > Pyrimidine deoxyribonucleotides > Pyrimidine deoxyribonucleoside monophosphates > Pyrimidine 2-deoxyribonucleoside monophosphates
IUPAC Name [3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C10H15N2O8P/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(20-8)4-19-21(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,11,14,15)(H2,16,17,18)
InChI Key GYOZYWVXFNDGLU-UHFFFAOYSA-N
Popularity 26 references in papers

Physical and Chemical Properties

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Molecular Formula C10H15N2O8P
Molecular Weight 322.21 g/mol
Exact Mass 322.05660244 g/mol
Topological Polar Surface Area (TPSA) 146.00 Ų
XlogP -2.80
Atomic LogP (AlogP) -1.40
H-Bond Acceptor 7
H-Bond Donor 4
Rotatable Bonds 4

Synonyms

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(3-Hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl)methyl dihydrogen phosphate
RefChem:1050105
Thymidine 5'MP
thymidine 5'-monophos-phate
SCHEMBL16092807
DTXSID10861902
CHEBI:181566
NSC46713
L001240
1-(2-Deoxy-5-O-phosphonopentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione

2D Structure

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2D Structure of (3-Hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl)methyl dihydrogen phosphate

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6480 64.80%
Caco-2 - 0.8927 89.27%
Blood Brain Barrier + 0.5750 57.50%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Mitochondria 0.6793 67.93%
OATP2B1 inhibitior - 0.8646 86.46%
OATP1B1 inhibitior + 0.9503 95.03%
OATP1B3 inhibitior + 0.9403 94.03%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.9683 96.83%
P-glycoprotein inhibitior - 0.8966 89.66%
P-glycoprotein substrate - 0.9313 93.13%
CYP3A4 substrate + 0.5575 55.75%
CYP2C9 substrate - 0.7881 78.81%
CYP2D6 substrate - 0.8705 87.05%
CYP3A4 inhibition - 0.8230 82.30%
CYP2C9 inhibition - 0.8806 88.06%
CYP2C19 inhibition - 0.8753 87.53%
CYP2D6 inhibition - 0.9153 91.53%
CYP1A2 inhibition - 0.8991 89.91%
CYP2C8 inhibition - 0.9149 91.49%
CYP inhibitory promiscuity - 0.9228 92.28%
UGT catelyzed - 0.8000 80.00%
Carcinogenicity (binary) - 0.8200 82.00%
Carcinogenicity (trinary) Non-required 0.4976 49.76%
Eye corrosion - 0.9841 98.41%
Eye irritation - 0.9700 97.00%
Skin irritation - 0.8016 80.16%
Skin corrosion - 0.9368 93.68%
Ames mutagenesis - 0.7100 71.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5757 57.57%
Micronuclear + 0.9800 98.00%
Hepatotoxicity + 0.7069 70.69%
skin sensitisation - 0.8770 87.70%
Respiratory toxicity + 0.8333 83.33%
Reproductive toxicity + 0.9333 93.33%
Mitochondrial toxicity + 0.8750 87.50%
Nephrotoxicity - 0.6233 62.33%
Acute Oral Toxicity (c) III 0.5618 56.18%
Estrogen receptor binding + 0.5757 57.57%
Androgen receptor binding + 0.7348 73.48%
Thyroid receptor binding + 0.5652 56.52%
Glucocorticoid receptor binding + 0.5892 58.92%
Aromatase binding - 0.5642 56.42%
PPAR gamma + 0.6462 64.62%
Honey bee toxicity - 0.8137 81.37%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.5800 58.00%
Fish aquatic toxicity + 0.7335 73.35%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.17% 96.09%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 94.65% 86.92%
CHEMBL3230 O95977 Sphingosine 1-phosphate receptor Edg-6 92.13% 94.01%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.49% 97.09%
CHEMBL3401 O75469 Pregnane X receptor 91.37% 94.73%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.20% 95.56%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 90.33% 85.14%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 89.64% 80.33%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 89.55% 94.45%
CHEMBL3351 Q13085 Acetyl-CoA carboxylase 1 88.08% 93.04%
CHEMBL2581 P07339 Cathepsin D 86.34% 98.95%
CHEMBL253 P34972 Cannabinoid CB2 receptor 86.09% 97.25%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 86.06% 91.71%
CHEMBL1806 P11388 DNA topoisomerase II alpha 85.91% 89.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 85.23% 99.23%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 85.12% 100.00%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 84.74% 94.00%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 81.20% 94.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.52% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 1139
LOTUS LTS0245348
wikiData Q105024006