3'-Epidaunorubicin

Details

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Internal ID 7ebb97db-3bbc-46f2-96f4-98fb15f75664
Taxonomy Phenylpropanoids and polyketides > Anthracyclines
IUPAC Name (7S,9S)-9-acetyl-7-[(2R,4R,5S,6S)-4-amino-5-hydroxy-6-methyloxan-2-yl]oxy-6,9,11-trihydroxy-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C27H29NO10/c1-10-22(30)14(28)7-17(37-10)38-16-9-27(35,11(2)29)8-13-19(16)26(34)21-20(24(13)32)23(31)12-5-4-6-15(36-3)18(12)25(21)33/h4-6,10,14,16-17,22,30,32,34-35H,7-9,28H2,1-3H3/t10-,14+,16-,17-,22+,27-/m0/s1
InChI Key STQGQHZAVUOBTE-GKPNIHARSA-N
Popularity 7 references in papers

Physical and Chemical Properties

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Molecular Formula C27H29NO10
Molecular Weight 527.50 g/mol
Exact Mass 527.17914612 g/mol
Topological Polar Surface Area (TPSA) 186.00 Ų
XlogP 1.80
Atomic LogP (AlogP) 1.03
H-Bond Acceptor 11
H-Bond Donor 5
Rotatable Bonds 4

Synonyms

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3'-epi-Daunorubicin
66322-65-4
5,12-Naphthacenedione, 8-acetyl-10-((3-amino-2,3,6-trideoxy-alpha-L-xylo-hexopyranosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-1-methoxy-, (8S-cis)-

2D Structure

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2D Structure of 3'-Epidaunorubicin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7316 73.16%
Caco-2 - 0.8305 83.05%
Blood Brain Barrier - 1.0000 100.00%
Human oral bioavailability - 0.9143 91.43%
Subcellular localzation Nucleus 0.7949 79.49%
OATP2B1 inhibitior - 0.7608 76.08%
OATP1B1 inhibitior + 0.9063 90.63%
OATP1B3 inhibitior + 0.9483 94.83%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior + 0.7925 79.25%
P-glycoprotein inhibitior - 0.6926 69.26%
P-glycoprotein substrate + 0.9533 95.33%
CYP3A4 substrate + 0.6453 64.53%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8060 80.60%
CYP3A4 inhibition - 0.9157 91.57%
CYP2C9 inhibition - 0.9448 94.48%
CYP2C19 inhibition - 0.9527 95.27%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition + 0.8777 87.77%
CYP2C8 inhibition - 0.9470 94.70%
CYP inhibitory promiscuity - 0.9543 95.43%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.5598 55.98%
Eye corrosion - 0.9909 99.09%
Eye irritation - 0.9541 95.41%
Skin irritation - 0.8003 80.03%
Skin corrosion - 0.9300 93.00%
Ames mutagenesis + 1.0000 100.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5964 59.64%
Micronuclear + 0.7100 71.00%
Hepatotoxicity - 0.9500 95.00%
skin sensitisation - 0.8821 88.21%
Respiratory toxicity + 0.9889 98.89%
Reproductive toxicity + 0.9889 98.89%
Mitochondrial toxicity + 0.9750 97.50%
Nephrotoxicity + 0.5573 55.73%
Acute Oral Toxicity (c) II 0.7589 75.89%
Estrogen receptor binding + 0.8953 89.53%
Androgen receptor binding + 0.8697 86.97%
Thyroid receptor binding + 0.5145 51.45%
Glucocorticoid receptor binding + 0.8951 89.51%
Aromatase binding + 0.8314 83.14%
PPAR gamma + 0.8707 87.07%
Honey bee toxicity - 0.6604 66.04%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.5000 50.00%
Fish aquatic toxicity + 0.8399 83.99%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1293232 Q16637 Survival motor neuron protein 631 nM
Potency
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.66% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 98.41% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.28% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 96.47% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 96.41% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 95.67% 86.33%
CHEMBL2581 P07339 Cathepsin D 93.11% 98.95%
CHEMBL5608 Q16288 NT-3 growth factor receptor 91.57% 95.89%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 91.47% 99.23%
CHEMBL2535 P11166 Glucose transporter 90.22% 98.75%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 87.44% 97.14%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 87.20% 94.00%
CHEMBL241 Q14432 Phosphodiesterase 3A 87.16% 92.94%
CHEMBL340 P08684 Cytochrome P450 3A4 86.95% 91.19%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 85.70% 94.45%
CHEMBL1994 P08235 Mineralocorticoid receptor 85.59% 100.00%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 84.83% 95.50%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 84.49% 96.00%
CHEMBL2094127 P06493 Cyclin-dependent kinase 1/cyclin B 83.98% 96.00%
CHEMBL226 P30542 Adenosine A1 receptor 83.75% 95.93%
CHEMBL3474 P14555 Phospholipase A2 group IIA 82.11% 94.05%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 81.50% 92.88%
CHEMBL4208 P20618 Proteasome component C5 81.11% 90.00%
CHEMBL3864 Q06124 Protein-tyrosine phosphatase 2C 80.89% 94.42%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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Cross-Links

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PubChem 125250
LOTUS LTS0136553
wikiData Q105260498