D-2-Hydroxyglutaric acid

Details

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Internal ID a490b245-46aa-4a29-9422-79422622db72
Taxonomy Organic acids and derivatives > Hydroxy acids and derivatives > Short-chain hydroxy acids and derivatives
IUPAC Name (2R)-2-hydroxypentanedioic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C5H8O5/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/t3-/m1/s1
InChI Key HWXBTNAVRSUOJR-GSVOUGTGSA-N
Popularity 670 references in papers

Physical and Chemical Properties

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Molecular Formula C5H8O5
Molecular Weight 148.11 g/mol
Exact Mass 148.03717335 g/mol
Topological Polar Surface Area (TPSA) 94.80 Ų
XlogP -1.00
Atomic LogP (AlogP) -0.70
H-Bond Acceptor 3
H-Bond Donor 3
Rotatable Bonds 4

Synonyms

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(2R)-2-hydroxypentanedioic acid
D-2-Hydroxyglutaric acid
R9UK2G8Y79
2-Hydroxyglutaric acid, (R)-
DTXSID80897218
RefChem:1082844
DTXCID001326609
(R)-2-Hydroxypentanedioic acid
(R)-2-hydroxyglutarate
d-alpha-hydroxyglutaric acid
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of D-2-Hydroxyglutaric acid

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5558 55.58%
Caco-2 - 0.9688 96.88%
Blood Brain Barrier - 0.5500 55.00%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Mitochondria 0.8239 82.39%
OATP2B1 inhibitior - 0.8396 83.96%
OATP1B1 inhibitior + 0.9581 95.81%
OATP1B3 inhibitior + 0.9609 96.09%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.9894 98.94%
P-glycoprotein inhibitior - 0.9927 99.27%
P-glycoprotein substrate - 0.9915 99.15%
CYP3A4 substrate - 0.7480 74.80%
CYP2C9 substrate + 0.5992 59.92%
CYP2D6 substrate - 0.8355 83.55%
CYP3A4 inhibition - 0.9612 96.12%
CYP2C9 inhibition - 0.9547 95.47%
CYP2C19 inhibition - 0.9658 96.58%
CYP2D6 inhibition - 0.9668 96.68%
CYP1A2 inhibition - 0.8909 89.09%
CYP2C8 inhibition - 0.9954 99.54%
CYP inhibitory promiscuity - 0.9931 99.31%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.8030 80.30%
Carcinogenicity (trinary) Non-required 0.7568 75.68%
Eye corrosion + 0.6701 67.01%
Eye irritation + 0.8805 88.05%
Skin irritation - 0.6254 62.54%
Skin corrosion + 0.7765 77.65%
Ames mutagenesis - 0.9600 96.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8170 81.70%
Micronuclear - 0.7400 74.00%
Hepatotoxicity + 0.5128 51.28%
skin sensitisation - 0.8602 86.02%
Respiratory toxicity - 0.6000 60.00%
Reproductive toxicity - 0.8853 88.53%
Mitochondrial toxicity - 0.5250 52.50%
Nephrotoxicity - 0.7560 75.60%
Acute Oral Toxicity (c) III 0.6131 61.31%
Estrogen receptor binding - 0.9327 93.27%
Androgen receptor binding - 0.8611 86.11%
Thyroid receptor binding - 0.9209 92.09%
Glucocorticoid receptor binding - 0.6968 69.68%
Aromatase binding - 0.8920 89.20%
PPAR gamma - 0.8951 89.51%
Honey bee toxicity - 0.9499 94.99%
Biodegradation + 0.9250 92.50%
Crustacea aquatic toxicity - 0.9700 97.00%
Fish aquatic toxicity - 0.8116 81.16%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL5896 O75164 Lysine-specific demethylase 4A 24000 nM
IC50
PMID: 21955276

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.15% 96.09%
CHEMBL221 P23219 Cyclooxygenase-1 89.42% 90.17%
CHEMBL2581 P07339 Cathepsin D 89.13% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.63% 99.17%
CHEMBL4040 P28482 MAP kinase ERK2 84.06% 83.82%
CHEMBL5285 Q99683 Mitogen-activated protein kinase kinase kinase 5 83.26% 92.26%
CHEMBL1907591 P30926 Neuronal acetylcholine receptor; alpha4/beta4 81.15% 100.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Euphorbia resinifera

Cross-Links

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PubChem 439391
NPASS NPC38891
ChEMBL CHEMBL1614745
LOTUS LTS0049336
wikiData Q27104222