2-C-methyl-D-erythritol 2,4-cyclodiphosphate

Details

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Internal ID f2cf72ea-965d-4f96-91b9-e04c8ec92e5f
Taxonomy Organic oxygen compounds > Organic oxoanionic compounds > Organic pyrophosphates
IUPAC Name (6S,7R)-2,4-dihydroxy-6-(hydroxymethyl)-6-methyl-2,4-dioxo-1,3,5,2lambda5,4lambda5-trioxadiphosphocan-7-ol
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C5H12O9P2/c1-5(3-6)4(7)2-12-15(8,9)14-16(10,11)13-5/h4,6-7H,2-3H2,1H3,(H,8,9)(H,10,11)/t4-,5+/m1/s1
InChI Key SFRQRNJMIIUYDI-UHNVWZDZSA-N
Popularity 242 references in papers

Physical and Chemical Properties

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Molecular Formula C5H12O9P2
Molecular Weight 278.09 g/mol
Exact Mass 277.99565595 g/mol
Topological Polar Surface Area (TPSA) 143.00 Ų
XlogP -2.80
Atomic LogP (AlogP) -0.64
H-Bond Acceptor 7
H-Bond Donor 4
Rotatable Bonds 1

Synonyms

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143488-44-2
3-Methyl-1,2,3,4-tetrahydroxybutane-1,3-cyclic bisphosphate
2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
2-C-methyl-D-erythritol 2,4-cyclic diphosphate
(6S,7R)-6-(hydroxymethyl)-6-methyl-1,3,5,2,4-trioxadiphosphocane-2,4,7-triol 2,4-dioxide
1,3,5,2,4-Trioxadiphosphocane-6-methanol, 2,4,7-trihydroxy-6-methyl-, 2,4-dioxide, trans-
3-Mthbcp
SCHEMBL11952572
CHEBI:18425
DTXSID501123383
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5888 58.88%
Caco-2 - 0.8615 86.15%
Blood Brain Barrier + 0.6885 68.85%
Human oral bioavailability - 0.5143 51.43%
Subcellular localzation Mitochondria 0.5689 56.89%
OATP2B1 inhibitior - 0.8546 85.46%
OATP1B1 inhibitior + 0.9440 94.40%
OATP1B3 inhibitior + 0.9448 94.48%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior - 0.9648 96.48%
P-glycoprotein inhibitior - 0.9413 94.13%
P-glycoprotein substrate - 0.8924 89.24%
CYP3A4 substrate + 0.5206 52.06%
CYP2C9 substrate - 0.8151 81.51%
CYP2D6 substrate - 0.8157 81.57%
CYP3A4 inhibition - 0.9277 92.77%
CYP2C9 inhibition - 0.8506 85.06%
CYP2C19 inhibition - 0.8256 82.56%
CYP2D6 inhibition - 0.8985 89.85%
CYP1A2 inhibition - 0.8566 85.66%
CYP2C8 inhibition - 0.9543 95.43%
CYP inhibitory promiscuity - 0.9803 98.03%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.8500 85.00%
Carcinogenicity (trinary) Non-required 0.5135 51.35%
Eye corrosion - 0.9460 94.60%
Eye irritation - 0.9829 98.29%
Skin irritation - 0.7531 75.31%
Skin corrosion - 0.8587 85.87%
Ames mutagenesis + 0.6400 64.00%
Human Ether-a-go-go-Related Gene inhibition - 0.7058 70.58%
Micronuclear - 0.7200 72.00%
Hepatotoxicity - 0.5887 58.87%
skin sensitisation - 0.8556 85.56%
Respiratory toxicity - 0.7111 71.11%
Reproductive toxicity - 0.5333 53.33%
Mitochondrial toxicity + 0.5125 51.25%
Nephrotoxicity + 0.6924 69.24%
Acute Oral Toxicity (c) III 0.5324 53.24%
Estrogen receptor binding - 0.4810 48.10%
Androgen receptor binding - 0.6079 60.79%
Thyroid receptor binding - 0.5344 53.44%
Glucocorticoid receptor binding - 0.7735 77.35%
Aromatase binding - 0.7355 73.55%
PPAR gamma - 0.5724 57.24%
Honey bee toxicity - 0.8660 86.60%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.6700 67.00%
Fish aquatic toxicity - 0.4798 47.98%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.42% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 89.52% 91.11%
CHEMBL253 P34972 Cannabinoid CB2 receptor 87.01% 97.25%
CHEMBL218 P21554 Cannabinoid CB1 receptor 84.34% 96.61%
CHEMBL1994 P08235 Mineralocorticoid receptor 82.39% 100.00%
CHEMBL4040 P28482 MAP kinase ERK2 80.99% 83.82%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 80.20% 96.95%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Arabidopsis thaliana

Cross-Links

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PubChem 126747
LOTUS LTS0208549
wikiData Q27103069