28-deoxystambomycin B

Details

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Internal ID 0ca87e9a-ca5a-4303-b0a3-2600058da6f1
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Aminosaccharides > Aminoglycosides
IUPAC Name (6E,30E,42E,44E)-50-[(2R,3R,4S,5S,6R)-4-(dimethylamino)-3,5-dihydroxy-6-methyloxan-2-yl]oxy-1,8,10,14,16,20,22,24,28,32,34,38,40,46-tetradecahydroxy-5,15,19,31,39,45,47,51-octamethyl-29-(5-methylhexyl)-4,52-dioxabicyclo[46.3.1]dopentaconta-6,30,42,44-tetraen-3-one
SMILES (Canonical) CC1CCC(C(C(CCCC(CC(C=CC(OC(=O)CC2(C(C(CC(O2)C(C(C(=CC=CCC(C(C(CCCC(CC(C(=CC(C(CCCC(CC(CC1O)O)O)O)CCCCC(C)C)C)O)O)O)C)O)C)O)C)OC3C(C(C(C(O3)C)O)N(C)C)O)C)O)C)O)O)O)C)O
SMILES (Isomeric) C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OC2CC3C(C(/C(=C/C=C/CC(C(C(CCCC(CC(/C(=C/C(C(CCCC(CC(CC(C(CCC(C(C(CCCC(CC(/C=C/C(OC(=O)CC(C2C)(O3)O)C)O)O)O)C)O)C)O)O)O)O)CCCCC(C)C)/C)O)O)O)C)O)/C)O)C)O)N(C)C)O
InChI InChI=1S/C73H133NO21/c1-42(2)21-14-16-23-52-35-45(5)64(86)38-55(77)26-19-29-59(81)47(7)58(80)27-17-15-22-44(4)69(88)49(9)65-40-66(94-72-71(90)68(74(12)13)70(89)51(11)93-72)50(10)73(91,95-65)41-67(87)92-46(6)32-33-56(78)36-53(75)24-18-28-60(82)48(8)61(83)34-31-43(3)63(85)39-57(79)37-54(76)25-20-30-62(52)84/h15,17,22,32-33,35,42-43,46-66,68-72,75-86,88-91H,14,16,18-21,23-31,34,36-41H2,1-13H3/b17-15+,33-32+,44-22+,45-35+/t43?,46?,47?,48?,49?,50?,51-,52?,53?,54?,55?,56?,57?,58?,59?,60?,61?,62?,63?,64?,65?,66?,68+,69?,70-,71-,72+,73?/m1/s1
InChI Key JGIKPMARXACVAG-VFQBYYMPSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C73H133NO21
Molecular Weight 1360.80 g/mol
Exact Mass 1359.93701025 g/mol
Topological Polar Surface Area (TPSA) 381.00 Ų
XlogP 5.80
Atomic LogP (AlogP) 5.53
H-Bond Acceptor 22
H-Bond Donor 16
Rotatable Bonds 8

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of 28-deoxystambomycin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6332 63.32%
Caco-2 - 0.8617 86.17%
Blood Brain Barrier - 0.7750 77.50%
Human oral bioavailability - 0.7143 71.43%
Subcellular localzation Mitochondria 0.5143 51.43%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8165 81.65%
OATP1B3 inhibitior + 0.9235 92.35%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.8000 80.00%
BSEP inhibitior + 0.9699 96.99%
P-glycoprotein inhibitior + 0.7425 74.25%
P-glycoprotein substrate + 0.8239 82.39%
CYP3A4 substrate + 0.7578 75.78%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8438 84.38%
CYP3A4 inhibition - 0.9146 91.46%
CYP2C9 inhibition - 0.8500 85.00%
CYP2C19 inhibition - 0.8340 83.40%
CYP2D6 inhibition - 0.8954 89.54%
CYP1A2 inhibition - 0.8420 84.20%
CYP2C8 inhibition + 0.8042 80.42%
CYP inhibitory promiscuity - 0.9403 94.03%
UGT catelyzed + 1.0000 100.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.5400 54.00%
Eye corrosion - 0.9858 98.58%
Eye irritation - 0.8975 89.75%
Skin irritation - 0.7324 73.24%
Skin corrosion - 0.9232 92.32%
Ames mutagenesis - 0.6000 60.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7823 78.23%
Micronuclear + 0.5900 59.00%
Hepatotoxicity + 0.5750 57.50%
skin sensitisation - 0.8516 85.16%
Respiratory toxicity + 0.8778 87.78%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity + 0.9500 95.00%
Nephrotoxicity - 0.6446 64.46%
Acute Oral Toxicity (c) III 0.6753 67.53%
Estrogen receptor binding + 0.8032 80.32%
Androgen receptor binding + 0.7142 71.42%
Thyroid receptor binding + 0.6730 67.30%
Glucocorticoid receptor binding + 0.8017 80.17%
Aromatase binding + 0.6048 60.48%
PPAR gamma + 0.8368 83.68%
Honey bee toxicity - 0.6234 62.34%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity + 0.5500 55.00%
Fish aquatic toxicity + 0.8562 85.62%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 98.46% 96.77%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.96% 91.11%
CHEMBL2581 P07339 Cathepsin D 94.89% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.85% 95.56%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.80% 96.09%
CHEMBL4685 P14902 Indoleamine 2,3-dioxygenase 93.76% 96.38%
CHEMBL3359 P21462 Formyl peptide receptor 1 93.37% 93.56%
CHEMBL3837 P07711 Cathepsin L 92.79% 96.61%
CHEMBL226 P30542 Adenosine A1 receptor 92.63% 95.93%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.50% 97.09%
CHEMBL3401 O75469 Pregnane X receptor 92.16% 94.73%
CHEMBL5103 Q969S8 Histone deacetylase 10 92.14% 90.08%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 91.69% 94.45%
CHEMBL5608 Q16288 NT-3 growth factor receptor 91.03% 95.89%
CHEMBL1937 Q92769 Histone deacetylase 2 91.02% 94.75%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 90.81% 96.90%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 90.76% 98.75%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 89.45% 95.89%
CHEMBL344 Q99705 Melanin-concentrating hormone receptor 1 86.62% 92.50%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 86.48% 91.07%
CHEMBL2563 Q9UQL6 Histone deacetylase 5 85.73% 89.67%
CHEMBL1871 P10275 Androgen Receptor 85.67% 96.43%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 85.58% 100.00%
CHEMBL5469 Q14289 Protein tyrosine kinase 2 beta 84.00% 91.03%
CHEMBL3267 P48736 PI3-kinase p110-gamma subunit 83.61% 95.71%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 83.44% 96.21%
CHEMBL4227 P25090 Lipoxin A4 receptor 83.26% 100.00%
CHEMBL204 P00734 Thrombin 83.22% 96.01%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 82.76% 97.33%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.59% 86.33%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 82.35% 96.47%
CHEMBL1806 P11388 DNA topoisomerase II alpha 81.40% 89.00%
CHEMBL4005 P42336 PI3-kinase p110-alpha subunit 81.28% 97.47%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 81.18% 97.14%
CHEMBL4105838 Q96GG9 DCN1-like protein 1 80.39% 95.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 146684666
LOTUS LTS0235291
wikiData Q105127411