YM-254890

Details

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Internal ID cf4a80bb-ddc6-4813-889a-0872bb64eb45
Taxonomy Organic acids and derivatives > Peptidomimetics > Depsipeptides > Cyclic depsipeptides
IUPAC Name [1-[21-acetamido-18-benzyl-3-(1-methoxyethyl)-4,9,10,12,16,22-hexamethyl-15-methylidene-2,5,8,11,14,17,20-heptaoxo-1,19-dioxa-4,7,10,13,16-pentazacyclodocos-6-yl]-2-methylpropyl] 2-acetamido-3-hydroxy-4-methylpentanoate
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C46H69N7O15/c1-22(2)37(56)34(49-30(11)55)45(63)68-38(23(3)4)35-43(61)53(14)36(28(9)65-15)46(64)66-27(8)33(48-29(10)54)44(62)67-32(21-31-19-17-16-18-20-31)42(60)52(13)25(6)39(57)47-24(5)41(59)51(12)26(7)40(58)50-35/h16-20,22-24,26-28,32-38,56H,6,21H2,1-5,7-15H3,(H,47,57)(H,48,54)(H,49,55)(H,50,58)
InChI Key QVYLWCAYZGFGNF-UHFFFAOYSA-N
Popularity 75 references in papers

Physical and Chemical Properties

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Molecular Formula C46H69N7O15
Molecular Weight 960.10 g/mol
Exact Mass 959.48516452 g/mol
Topological Polar Surface Area (TPSA) 286.00 Ų
XlogP 2.10
Atomic LogP (AlogP) -0.65
H-Bond Acceptor 15
H-Bond Donor 5
Rotatable Bonds 12

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of YM-254890

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7941 79.41%
Caco-2 - 0.8582 85.82%
Blood Brain Barrier - 0.8500 85.00%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.5652 56.52%
OATP2B1 inhibitior + 0.5707 57.07%
OATP1B1 inhibitior + 0.8004 80.04%
OATP1B3 inhibitior + 0.9204 92.04%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.9818 98.18%
BSEP inhibitior + 0.9011 90.11%
P-glycoprotein inhibitior + 0.7571 75.71%
P-glycoprotein substrate + 0.8561 85.61%
CYP3A4 substrate + 0.7268 72.68%
CYP2C9 substrate - 0.6044 60.44%
CYP2D6 substrate - 0.8594 85.94%
CYP3A4 inhibition + 0.7512 75.12%
CYP2C9 inhibition - 0.8290 82.90%
CYP2C19 inhibition - 0.8089 80.89%
CYP2D6 inhibition - 0.9124 91.24%
CYP1A2 inhibition - 0.8957 89.57%
CYP2C8 inhibition + 0.7466 74.66%
CYP inhibitory promiscuity - 0.9380 93.80%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.7700 77.00%
Carcinogenicity (trinary) Non-required 0.5646 56.46%
Eye corrosion - 0.9863 98.63%
Eye irritation - 0.9028 90.28%
Skin irritation - 0.7869 78.69%
Skin corrosion - 0.9392 93.92%
Ames mutagenesis - 0.5100 51.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4264 42.64%
Micronuclear + 0.8700 87.00%
Hepatotoxicity + 0.5625 56.25%
skin sensitisation - 0.8582 85.82%
Respiratory toxicity + 0.7667 76.67%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.8125 81.25%
Nephrotoxicity + 0.7264 72.64%
Acute Oral Toxicity (c) III 0.6375 63.75%
Estrogen receptor binding + 0.7834 78.34%
Androgen receptor binding + 0.7367 73.67%
Thyroid receptor binding + 0.6067 60.67%
Glucocorticoid receptor binding + 0.7368 73.68%
Aromatase binding + 0.6109 61.09%
PPAR gamma + 0.7652 76.52%
Honey bee toxicity - 0.6800 68.00%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.5500 55.00%
Fish aquatic toxicity + 0.8175 81.75%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 99.81% 85.14%
CHEMBL2581 P07339 Cathepsin D 99.77% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.07% 96.09%
CHEMBL3837 P07711 Cathepsin L 97.02% 96.61%
CHEMBL4072 P07858 Cathepsin B 96.09% 93.67%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.15% 91.11%
CHEMBL2563 Q9UQL6 Histone deacetylase 5 92.96% 89.67%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 91.09% 95.50%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.68% 95.56%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.27% 99.17%
CHEMBL5103 Q969S8 Histone deacetylase 10 86.00% 90.08%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 85.97% 93.00%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 85.87% 97.14%
CHEMBL1163125 O60885 Bromodomain-containing protein 4 85.62% 97.31%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 85.53% 94.45%
CHEMBL5028 O14672 ADAM10 84.47% 97.50%
CHEMBL2413 P32246 C-C chemokine receptor type 1 84.23% 89.50%
CHEMBL3401 O75469 Pregnane X receptor 82.87% 94.73%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.46% 86.33%
CHEMBL1949 P62937 Cyclophilin A 81.96% 98.57%
CHEMBL2693 Q9UIQ6 Cystinyl aminopeptidase 81.65% 97.64%
CHEMBL3891 P07384 Calpain 1 80.25% 93.04%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 9919455
LOTUS LTS0125189
wikiData Q75065818