2-Hydroxymethyl-3,4-dihydroxy-5-methylpyrrolidin

Details

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Internal ID 77fda56e-1af9-40d7-8963-f71e0cffcb61
Taxonomy Organoheterocyclic compounds > Pyrrolidines
IUPAC Name 2-(hydroxymethyl)-5-methylpyrrolidine-3,4-diol
SMILES (Canonical) CC1C(C(C(N1)CO)O)O
SMILES (Isomeric) CC1C(C(C(N1)CO)O)O
InChI InChI=1S/C6H13NO3/c1-3-5(9)6(10)4(2-8)7-3/h3-10H,2H2,1H3
InChI Key YRBKDBZXOAEMOT-UHFFFAOYSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C6H13NO3
Molecular Weight 147.17 g/mol
Exact Mass 147.08954328 g/mol
Topological Polar Surface Area (TPSA) 72.70 Ų
XlogP -1.30
Atomic LogP (AlogP) -1.94
H-Bond Acceptor 4
H-Bond Donor 4
Rotatable Bonds 1

Synonyms

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2-Hydroxymethyl-3,4-dihydroxy-5-methylpyrrolidin

2D Structure

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2D Structure of 2-Hydroxymethyl-3,4-dihydroxy-5-methylpyrrolidin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8844 88.44%
Caco-2 - 0.9188 91.88%
Blood Brain Barrier + 0.6250 62.50%
Human oral bioavailability + 0.6000 60.00%
Subcellular localzation Lysosomes 0.4799 47.99%
OATP2B1 inhibitior - 0.8520 85.20%
OATP1B1 inhibitior + 0.9531 95.31%
OATP1B3 inhibitior + 0.9414 94.14%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.9467 94.67%
P-glycoprotein inhibitior - 0.9811 98.11%
P-glycoprotein substrate - 0.8869 88.69%
CYP3A4 substrate - 0.7151 71.51%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.3873 38.73%
CYP3A4 inhibition - 0.9833 98.33%
CYP2C9 inhibition - 0.9178 91.78%
CYP2C19 inhibition - 0.9485 94.85%
CYP2D6 inhibition - 0.9096 90.96%
CYP1A2 inhibition - 0.8920 89.20%
CYP2C8 inhibition - 0.9608 96.08%
CYP inhibitory promiscuity - 0.9294 92.94%
UGT catelyzed + 1.0000 100.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.6825 68.25%
Eye corrosion - 0.9756 97.56%
Eye irritation - 0.8816 88.16%
Skin irritation - 0.7412 74.12%
Skin corrosion - 0.7569 75.69%
Ames mutagenesis - 0.6300 63.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6495 64.95%
Micronuclear + 0.6074 60.74%
Hepatotoxicity - 0.5733 57.33%
skin sensitisation - 0.8515 85.15%
Respiratory toxicity - 0.8111 81.11%
Reproductive toxicity + 0.7333 73.33%
Mitochondrial toxicity + 0.6875 68.75%
Nephrotoxicity + 0.4626 46.26%
Acute Oral Toxicity (c) III 0.6156 61.56%
Estrogen receptor binding - 0.8902 89.02%
Androgen receptor binding - 0.8244 82.44%
Thyroid receptor binding - 0.7969 79.69%
Glucocorticoid receptor binding - 0.8313 83.13%
Aromatase binding - 0.7957 79.57%
PPAR gamma - 0.8469 84.69%
Honey bee toxicity - 0.9497 94.97%
Biodegradation + 0.6500 65.00%
Crustacea aquatic toxicity - 0.8400 84.00%
Fish aquatic toxicity - 0.9851 98.51%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.07% 96.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 88.53% 97.25%
CHEMBL3137262 O60341 LSD1/CoREST complex 84.75% 97.09%
CHEMBL2996 Q05655 Protein kinase C delta 84.25% 97.79%
CHEMBL1907589 P17787 Neuronal acetylcholine receptor; alpha4/beta2 82.65% 94.55%
CHEMBL2581 P07339 Cathepsin D 82.34% 98.95%
CHEMBL226 P30542 Adenosine A1 receptor 80.49% 95.93%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Angylocalyx pynaertii

Cross-Links

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PubChem 21876551
LOTUS LTS0224623
wikiData Q105352709