(1R,2R,3R,5S,8R)-5-(3-hydroxybutyl)-3-(hydroxymethyl)-2,3,5,6,7,8-hexahydro-1H-pyrrolizine-1,2-diol

Details

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Internal ID 3d68cafd-c54c-42e3-a48f-6fd01ec03452
Taxonomy Organoheterocyclic compounds > Pyrrolizidines
IUPAC Name (1R,2R,3R,5S,8R)-5-(3-hydroxybutyl)-3-(hydroxymethyl)-2,3,5,6,7,8-hexahydro-1H-pyrrolizine-1,2-diol
SMILES (Canonical) CC(CCC1CCC2N1C(C(C2O)O)CO)O
SMILES (Isomeric) CC(CC[C@@H]1CC[C@H]2N1[C@@H]([C@H]([C@@H]2O)O)CO)O
InChI InChI=1S/C12H23NO4/c1-7(15)2-3-8-4-5-9-11(16)12(17)10(6-14)13(8)9/h7-12,14-17H,2-6H2,1H3/t7?,8-,9-,10-,11-,12-/m1/s1
InChI Key CGZUVSCEWJVPBT-LVZGIILASA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C12H23NO4
Molecular Weight 245.32 g/mol
Exact Mass 245.16270821 g/mol
Topological Polar Surface Area (TPSA) 84.20 Ų
XlogP -0.20
Atomic LogP (AlogP) -0.92
H-Bond Acceptor 5
H-Bond Donor 4
Rotatable Bonds 4

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of (1R,2R,3R,5S,8R)-5-(3-hydroxybutyl)-3-(hydroxymethyl)-2,3,5,6,7,8-hexahydro-1H-pyrrolizine-1,2-diol

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8958 89.58%
Caco-2 - 0.7915 79.15%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability + 0.5143 51.43%
Subcellular localzation Lysosomes 0.5613 56.13%
OATP2B1 inhibitior - 0.8532 85.32%
OATP1B1 inhibitior + 0.9516 95.16%
OATP1B3 inhibitior + 0.9442 94.42%
MATE1 inhibitior - 0.9212 92.12%
OCT2 inhibitior - 0.8041 80.41%
BSEP inhibitior - 0.9406 94.06%
P-glycoprotein inhibitior - 0.9570 95.70%
P-glycoprotein substrate - 0.7326 73.26%
CYP3A4 substrate - 0.5338 53.38%
CYP2C9 substrate - 0.5894 58.94%
CYP2D6 substrate + 0.5541 55.41%
CYP3A4 inhibition - 0.9723 97.23%
CYP2C9 inhibition - 0.9057 90.57%
CYP2C19 inhibition - 0.9148 91.48%
CYP2D6 inhibition - 0.9202 92.02%
CYP1A2 inhibition - 0.8498 84.98%
CYP2C8 inhibition - 0.9677 96.77%
CYP inhibitory promiscuity - 0.9765 97.65%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.6308 63.08%
Eye corrosion - 0.9790 97.90%
Eye irritation - 0.9057 90.57%
Skin irritation - 0.7482 74.82%
Skin corrosion - 0.9120 91.20%
Ames mutagenesis - 0.7500 75.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6809 68.09%
Micronuclear + 0.5800 58.00%
Hepatotoxicity - 0.6038 60.38%
skin sensitisation - 0.8759 87.59%
Respiratory toxicity - 0.5444 54.44%
Reproductive toxicity + 0.6222 62.22%
Mitochondrial toxicity + 0.8250 82.50%
Nephrotoxicity - 0.6019 60.19%
Acute Oral Toxicity (c) III 0.5950 59.50%
Estrogen receptor binding - 0.7139 71.39%
Androgen receptor binding - 0.6621 66.21%
Thyroid receptor binding - 0.5467 54.67%
Glucocorticoid receptor binding - 0.6641 66.41%
Aromatase binding - 0.7869 78.69%
PPAR gamma - 0.8435 84.35%
Honey bee toxicity - 0.9049 90.49%
Biodegradation - 0.6000 60.00%
Crustacea aquatic toxicity - 0.9100 91.00%
Fish aquatic toxicity - 0.8292 82.92%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.42% 96.09%
CHEMBL2581 P07339 Cathepsin D 96.02% 98.95%
CHEMBL253 P34972 Cannabinoid CB2 receptor 95.20% 97.25%
CHEMBL226 P30542 Adenosine A1 receptor 91.07% 95.93%
CHEMBL3137262 O60341 LSD1/CoREST complex 90.57% 97.09%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 87.83% 95.89%
CHEMBL4005 P42336 PI3-kinase p110-alpha subunit 87.79% 97.47%
CHEMBL218 P21554 Cannabinoid CB1 receptor 86.46% 96.61%
CHEMBL2094135 Q96BI3 Gamma-secretase 86.24% 98.05%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 85.73% 97.29%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 84.12% 96.47%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.56% 95.89%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 82.26% 97.14%
CHEMBL4394 Q9NYA1 Sphingosine kinase 1 81.24% 96.03%
CHEMBL1795139 Q8IU80 Transmembrane protease serine 6 80.06% 98.33%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Ledebouria socialis
Scilla peruviana

Cross-Links

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PubChem 16737241
NPASS NPC473419
ChEMBL CHEMBL425308
LOTUS LTS0054462
wikiData Q104958479