1-Arachidonoyl-sn-glycero-3-phosphocholine

Details

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Internal ID db45c0c5-35c7-4dcb-bdc9-6682615d7e31
Taxonomy Lipids and lipid-like molecules > Glycerophospholipids > Glycerophosphocholines > Lysophosphatidylcholines > 1-acyl-sn-glycero-3-phosphocholines
IUPAC Name [(2R)-2-hydroxy-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyl]oxypropyl] 2-(trimethylazaniumyl)ethyl phosphate
SMILES (Canonical) CCCCCC=CCC=CCC=CCC=CCCCC(=O)OCC(COP(=O)([O-])OCC[N+](C)(C)C)O
SMILES (Isomeric) CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)OC[C@H](COP(=O)([O-])OCC[N+](C)(C)C)O
InChI InChI=1S/C28H50NO7P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-28(31)34-25-27(30)26-36-37(32,33)35-24-23-29(2,3)4/h9-10,12-13,15-16,18-19,27,30H,5-8,11,14,17,20-26H2,1-4H3/b10-9-,13-12-,16-15-,19-18-/t27-/m1/s1
InChI Key LAXQYRRMGGEGOH-JXRLJXCWSA-N
Popularity 34 references in papers

Physical and Chemical Properties

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Molecular Formula C28H50NO7P
Molecular Weight 543.70 g/mol
Exact Mass 543.33248993 g/mol
Topological Polar Surface Area (TPSA) 105.00 Ų
XlogP 4.70
Atomic LogP (AlogP) 5.24
H-Bond Acceptor 7
H-Bond Donor 1
Rotatable Bonds 23

Synonyms

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PC(20:4(5Z,8Z,11Z,14Z)/0:0)
1-arachidonoyl-glycero-3-phosphocholine
1-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine
PC(20:4/0:0)
60701-99-7
LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0)
[(2R)-2-hydroxy-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyl]oxypropyl] 2-(trimethylazaniumyl)ethyl phosphate
1-arachidonoyl-GPC
CHEBI:74344
LysoPC(20:4n6/0:0)
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of 1-Arachidonoyl-sn-glycero-3-phosphocholine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.9019 90.19%
Caco-2 - 0.8256 82.56%
Blood Brain Barrier + 0.5750 57.50%
Human oral bioavailability - 0.7429 74.29%
Subcellular localzation Plasma membrane 0.6650 66.50%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.7950 79.50%
OATP1B3 inhibitior + 0.9393 93.93%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.9071 90.71%
P-glycoprotein inhibitior + 0.6801 68.01%
P-glycoprotein substrate - 0.6155 61.55%
CYP3A4 substrate + 0.6103 61.03%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8394 83.94%
CYP3A4 inhibition - 0.7506 75.06%
CYP2C9 inhibition - 0.8723 87.23%
CYP2C19 inhibition - 0.7947 79.47%
CYP2D6 inhibition - 0.8950 89.50%
CYP1A2 inhibition - 0.8726 87.26%
CYP2C8 inhibition + 0.4635 46.35%
CYP inhibitory promiscuity - 0.9825 98.25%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.6100 61.00%
Carcinogenicity (trinary) Non-required 0.5742 57.42%
Eye corrosion - 0.9211 92.11%
Eye irritation - 0.9206 92.06%
Skin irritation - 0.7669 76.69%
Skin corrosion - 0.9251 92.51%
Ames mutagenesis - 0.7900 79.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7497 74.97%
Micronuclear - 0.5400 54.00%
Hepatotoxicity - 0.8125 81.25%
skin sensitisation - 0.8011 80.11%
Respiratory toxicity + 0.5111 51.11%
Reproductive toxicity - 0.7556 75.56%
Mitochondrial toxicity + 0.7625 76.25%
Nephrotoxicity - 0.7812 78.12%
Acute Oral Toxicity (c) III 0.5132 51.32%
Estrogen receptor binding + 0.7792 77.92%
Androgen receptor binding - 0.7203 72.03%
Thyroid receptor binding - 0.5000 50.00%
Glucocorticoid receptor binding + 0.5822 58.22%
Aromatase binding - 0.5135 51.35%
PPAR gamma + 0.5667 56.67%
Honey bee toxicity - 0.8623 86.23%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity + 0.5900 59.00%
Fish aquatic toxicity + 0.7366 73.66%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3060 Q9Y345 Glycine transporter 2 98.19% 99.17%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.21% 96.09%
CHEMBL2581 P07339 Cathepsin D 97.06% 98.95%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 96.53% 97.29%
CHEMBL230 P35354 Cyclooxygenase-2 94.10% 89.63%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 91.67% 92.86%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 90.33% 92.08%
CHEMBL2265 P23141 Acyl coenzyme A:cholesterol acyltransferase 89.20% 85.94%
CHEMBL239 Q07869 Peroxisome proliferator-activated receptor alpha 87.85% 90.75%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 86.34% 94.33%
CHEMBL3359 P21462 Formyl peptide receptor 1 85.87% 93.56%
CHEMBL321 P14780 Matrix metalloproteinase 9 85.33% 92.12%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 85.32% 96.00%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 85.05% 100.00%
CHEMBL3401 O75469 Pregnane X receptor 83.92% 94.73%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 83.82% 96.95%
CHEMBL1781 P11387 DNA topoisomerase I 83.79% 97.00%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 83.78% 91.24%
CHEMBL4227 P25090 Lipoxin A4 receptor 83.58% 100.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 82.31% 97.25%
CHEMBL5043 Q6P179 Endoplasmic reticulum aminopeptidase 2 81.64% 91.81%
CHEMBL221 P23219 Cyclooxygenase-1 81.59% 90.17%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 80.97% 93.03%
CHEMBL1907591 P30926 Neuronal acetylcholine receptor; alpha4/beta4 80.78% 100.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 24779476
LOTUS LTS0177979
wikiData Q27144625